The taxon hypothesis paradigm—on the unambiguous detection and communication of taxa
Here, we describe the taxon hypothesis (TH) paradigm, which covers the construction,
identification, and communication of taxa as datasets. Defining taxa as datasets of …
identification, and communication of taxa as datasets. Defining taxa as datasets of …
The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered
Abstract UNITE (https://unite. ut. ee) is a web-based database and sequence management
environment for molecular identification of eukaryotes. It targets the nuclear ribosomal …
environment for molecular identification of eukaryotes. It targets the nuclear ribosomal …
The intellectual content of taxonomy: a comment on DNA taxonomy
D Lipscomb, N Platnick, Q Wheeler - Trends in Ecology & Evolution, 2003 - cell.com
Tautz et al.[1] propose to 'solve'the lack of adequate classifications and effective
identification tools (the socalled 'taxonomic impediment') by replacing existing classifications …
identification tools (the socalled 'taxonomic impediment') by replacing existing classifications …
Taxonomy: renaissance or Tower of Babel?
J Mallet, K Willmott - Trends in Ecology & Evolution, 2003 - cell.com
Taxonomy, the science of naming and classifying organisms, is the original bioinformatics
and a fundamental basis for all biology. Yet over the past few decades, teaching and funding …
and a fundamental basis for all biology. Yet over the past few decades, teaching and funding …
Considerations and consequences of allowing DNA sequence data as types of fungal taxa
JC Zamora, M Svensson, R Kirschner, I Olariaga… - IMA fungus, 2018 - Springer
Nomenclatural type definitions are one of the most important concepts in biological
nomenclature. Being physical objects that can be re-studied by other researchers, types …
nomenclature. Being physical objects that can be re-studied by other researchers, types …
Tightening the requirements for species diagnoses would help integrate DNA-based descriptions in taxonomic practice
FE Rheindt, P Bouchard, RL Pyle… - PLoS …, 2023 - journals.plos.org
Modern advances in DNA sequencing hold the promise of facilitating descriptions of new
organisms at ever finer precision but have come with challenges as the major Codes of …
organisms at ever finer precision but have come with challenges as the major Codes of …
Genome-based microbial taxonomy coming of age
P Hugenholtz, A Skarshewski… - Cold Spring Harbor …, 2016 - cshperspectives.cshlp.org
Reconstructing the complete evolutionary history of extant life on our planet will be one of
the most fundamental accomplishments of scientific endeavor, akin to the completion of the …
the most fundamental accomplishments of scientific endeavor, akin to the completion of the …
Systematic identification of gene families for use as “markers” for phylogenetic and phylogeny-driven ecological studies of bacteria and archaea and their major …
With the astonishing rate that genomic and metagenomic sequence data sets are
accumulating, there are many reasons to constrain the data analyses. One approach to such …
accumulating, there are many reasons to constrain the data analyses. One approach to such …
Defining DNA-based operational taxonomic units for microbial-eukaryote ecology
DA Caron, PD Countway, P Savai… - Applied and …, 2009 - Am Soc Microbiol
ABSTRACT DNA sequence information has increasingly been used in ecological research
on microbial eukaryotes. Sequence-based approaches have included studies of the total …
on microbial eukaryotes. Sequence-based approaches have included studies of the total …
Formal description of sequence-based voucherless Fungi: promises and pitfalls, and how to resolve them
R Lücking, DL Hawksworth - IMA fungus, 2018 - Springer
There is urgent need for a formal nomenclature of sequence-based, voucherless Fungi,
given that environmental sequencing has accumulated more than one billion fungal ITS …
given that environmental sequencing has accumulated more than one billion fungal ITS …