FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

S Põlme, K Abarenkov, R Henrik Nilsson, BD Lindahl… - Fungal diversity, 2020 - Springer
The cryptic lifestyle of most fungi necessitates molecular identification of the guild in
environmental studies. Over the past decades, rapid development and affordability of …

Fungal functional ecology: bringing a trait‐based approach to plant‐associated fungi

AE Zanne, K Abarenkov, ME Afkhami… - Biological …, 2020 - Wiley Online Library
Fungi play many essential roles in ecosystems. They facilitate plant access to nutrients and
water, serve as decay agents that cycle carbon and nutrients through the soil, water and …

Fungal species concepts in the genomics era

J Xu - Genome, 2020 - cdnsciencepub.com
The 140 000 or so fungal species reported so far are heterogeneously defined based on
varying criteria such as morphological, physiological, mating, and (or) molecular features …

FungalTraits vs. FUNGuild: comparison of ecological functional assignments of leaf-and needle-associated fungi across 12 temperate tree species

B Tanunchai, L Ji, SA Schroeter, SFM Wahdan… - Microbial ecology, 2023 - Springer
Recently, a new annotation tool “FungalTraits” was created based on the previous FUNGuild
and FunFun databases, which has attracted high attention in the scientific community. These …

101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens

S Haridas, R Albert, M Binder, J Bloem… - Studies in …, 2020 - ingentaconnect.com
Dothideomycetes is the largest class of kingdom Fungi and comprises an incredible diversity
of lifestyles, many of which have evolved multiple times. Plant pathogens represent a major …

Improving taxonomic delimitation of fungal species in the age of genomics and phenomics

A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …

[PDF][PDF] Assessment of fungal diversity in the environment using metagenomics: a decade in review

S Cuadros-Orellana, LR Leite, A Smith… - Fungal Genomics & …, 2013 - researchgate.net
Fungi are ubiquitous inhabitants of soil and aquatic environments, and they establish and
maintain either parasitic or symbiotic relationships with animals and plants. They are major …

What are fungal species and how to delineate them?

KWT Chethana, IS Manawasinghe, VG Hurdeal… - Fungal Diversity, 2021 - Springer
This is the opening paper in the special issue of Fungal Diversity, which collates the data on
defining species. Defining and recognizing species has long been a controversial issue …

High-level classification of the Fungi and a tool for evolutionary ecological analyses

L Tedersoo, S Sánchez-Ramírez, U Koljalg, M Bahram… - Fungal diversity, 2018 - Springer
High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary
ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due …

Branching out: towards a trait-based understanding of fungal ecology

CA Aguilar-Trigueros, S Hempel, JR Powell… - Fungal Biology …, 2015 - Elsevier
Fungal ecology lags behind in the use of traits (ie phenotypic characteristics) to understand
ecological phenomena. We argue that this is a missed opportunity and that the selection and …