Quantitative and logic modelling of molecular and gene networks

N Le Novere - Nature Reviews Genetics, 2015 - nature.com
Behaviours of complex biomolecular systems are often irreducible to the elementary
properties of their individual components. Explanatory and predictive mathematical models …

Logic-based models in systems biology: a predictive and parameter-free network analysis method

ML Wynn, N Consul, SD Merajver… - Integrative biology, 2012 - academic.oup.com
Highly complex molecular networks, which play fundamental roles in almost all cellular
processes, are known to be dysregulated in a number of diseases, most notably in cancer …

Computational studies of gene regulatory networks: in numero molecular biology

J Hasty, D McMillen, F Isaacs, JJ Collins - Nature Reviews Genetics, 2001 - nature.com
Remarkable progress in genomic research is leading to a complete map of the building
blocks of biology. Knowledge of this map is, in turn, setting the stage for a fundamental …

Boolean modelingof genetic regulatory networks

R Albert - Complex networks, 2004 - Springer
Biological systems form complex networks of interaction on several scales, ranging from the
molecular to the ecosystem level. On the subcellular scale, interaction between genes and …

[图书][B] Computational modeling of genetic and biochemical networks

JM Bower, H Bolouri - 2001 - books.google.com
The advent of ever more sophisticated molecular manipulation techniques has made it clear
that cellular systems are far more complex and dynamic than previously thought. At the …

Modelling and analysis of gene regulatory networks

G Karlebach, R Shamir - Nature reviews Molecular cell biology, 2008 - nature.com
Gene regulatory networks have an important role in every process of life, including cell
differentiation, metabolism, the cell cycle and signal transduction. By understanding the …

[图书][B] Systems biology: properties of reconstructed networks

BØ Palsson - 2006 - books.google.com
Genome sequences are now available that enable us to determine the biological
components that make up a cell or an organism. The discipline of systems biology examines …

Modeling and simulation of genetic regulatory systems: a literature review

H De Jong - Journal of computational biology, 2002 - liebertpub.com
In order to understand the functioning of organisms on the molecular level, we need to know
which genes are expressed, when and where in the organism, and to which extent. The …

Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction

J Saez‐Rodriguez, LG Alexopoulos… - Molecular systems …, 2009 - embopress.org
Large‐scale protein signalling networks are useful for exploring complex biochemical
pathways but do not reveal how pathways respond to specific stimuli. Such specificity is …

Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments

NAW van Riel - Briefings in bioinformatics, 2006 - academic.oup.com
Abstract Systems biology applies quantitative, mechanistic modelling to study genetic
networks, signal transduction pathways and metabolic networks. Mathematical models of …