Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation

P Kindgren, R Ard, M Ivanov, S Marquardt - Nature communications, 2018 - nature.com
Most DNA in the genomes of higher organisms does not encode proteins, yet much is
transcribed by RNA polymerase II (RNAPII) into long non-coding RNAs (lncRNAs). The …

Cold-dependent expression and alternative splicing of Arabidopsis long non-coding RNAs

CPG Calixto, NA Tzioutziou, AB James… - Frontiers in Plant …, 2019 - frontiersin.org
Plants re-program their gene expression when responding to changing environmental
conditions. Besides differential gene expression, extensive alternative splicing (AS) of pre …

Identification of tissue-specific and cold-responsive lncRNAs in Medicago truncatula by high-throughput RNA sequencing

M Zhao, T Wang, T Sun, X Yu, R Tian, WH Zhang - BMC plant biology, 2020 - Springer
Abstract Background Long non-coding RNAs (lncRNAs) play important roles in the
regulation of plant responses to environmental stress by acting as essential regulators of …

Global identification of full‐length cassava lncRNAs unveils the role of cold‐responsive intergenic lncRNA 1 in cold stress response

S Li, Z Cheng, S Dong, Z Li, L Zou… - Plant, Cell & …, 2022 - Wiley Online Library
Long noncoding RNAs (lncRNAs) have been considered to be important regulators of gene
expression in a range of biological processes in plants. A large number of lncRNAs have …

A DEAD Box RNA Helicase Is Critical for Pre-mRNA Splicing, Cold-Responsive Gene Regulation, and Cold Tolerance in Arabidopsis

Q Guan, J Wu, Y Zhang, C Jiang, R Liu, C Chai… - The Plant …, 2013 - academic.oup.com
Cold stress resulting from chilling and freezing temperatures substantially reduces crop
production worldwide. To identify genes critical for cold tolerance in plants, we screened …

In vivo single-molecule analysis reveals COOLAIR RNA structural diversity

M Yang, P Zhu, J Cheema, R Bloomer, P Mikulski… - Nature, 2022 - nature.com
Cellular RNAs are heterogeneous with respect to their alternative processing and secondary
structures, but the functional importance of this complexity is still poorly understood. A set of …

Interplay between cold-responsive gene regulation, metabolism and RNA processing during plant cold acclimation

J Zhu, CH Dong, JK Zhu - Current opinion in plant biology, 2007 - Elsevier
Temperate plants are capable of developing freezing tolerance when they are exposed to
low nonfreezing temperatures. Acquired freezing tolerance involves extensive …

The unified ICE–CBF pathway provides a transcriptional feedback control of freezing tolerance during cold acclimation in Arabidopsis

YS Kim, M Lee, JH Lee, HJ Lee, CM Park - Plant molecular biology, 2015 - Springer
During cold acclimation, C-repeat binding factors (CBFs) activate downstream targets, such
as cold-regulated genes, leading to the acquisition of freezing tolerance in plants. Inducer of …

Research progress on plant noncoding RNAs in response to low-temperature stress

C Huo, B Zhang, R Wang - Plant Signaling & Behavior, 2022 - Taylor & Francis
Low temperature (LT) is an important factor limiting plant growth and distribution. Plants
have evolved sophisticated adaptive mechanisms to cope with hypothermia. RNA silencing …

The cbfs triple mutants reveal the essential functions of CBFs in cold acclimation and allow the definition of CBF regulons in Arabidopsis

Y Jia, Y Ding, Y Shi, X Zhang, Z Gong… - New Phytologist, 2016 - Wiley Online Library
In Arabidopsis, the C‐repeat binding factors (CBF s) have been extensively studied as key
transcription factors in the cold stress response. However, their exact functions in the cold …