Chemical structural novelty: on-targets and off-targets

ER Yera, AE Cleves, AN Jain - Journal of medicinal chemistry, 2011 - ACS Publications
Drug structures may be quantitatively compared based on 2D topological structural
considerations and based on 3D characteristics directly related to binding. A framework for …

Shikimate kinase, a protein target for drug design

JD Coracini, WF De Azevedo - Current medicinal chemistry, 2014 - ingentaconnect.com
ATP: shikimate 3-phosphotransferase catalyzes the fifth chemical reaction of shikimate
pathway. This metabolic route is responsible for the production of chorismate, a precursor of …

Recent advances in computer-aided drug design as applied to anti-influenza drug discovery

PL Mallipeddi, G Kumar, SW White… - Current topics in …, 2014 - ingentaconnect.com
Influenza is a seasonal and serious health threat, and the recent outbreak of H7N9 following
the pandemic spread of H1N1 in 2009 has served to emphasize the importance of anti …

Odorant-binding protein 3-oriented rational design and discovery of novel jasmonate derivatives as potential aphid-repellent agents

H Li, Z Zhu, Z Yang, S Du, Y Wang… - Journal of Agricultural …, 2022 - ACS Publications
Odorant-binding protein (OBP) is a potential target for developing insect behavior control
agents due to its properties in transporting semiochemicals. In this study, 12 novel jasmonic …

Computer-aided drug discovery: Novel 3, 9-disubstituted eudistomin U derivatives as potent antibacterial agents

J Dai, W Dan, N Li, J Wang - European Journal of Medicinal Chemistry, 2018 - Elsevier
Abstract Thirty-two new 3, 9-disubstituted eudistomin U derivatives were designed and
synthesized based on computer-aided drug discovery (CADD). Sixteen 3, 9-disubstituted …

Two new parameters based on distances in a receiver operating characteristic chart for the selection of classification models

A Pérez-Garrido, AM Helguera, F Borges… - Journal of chemical …, 2011 - ACS Publications
There are several indices that provide an indication of different types on the performance of
QSAR classification models, being the area under a Receiver Operating Characteristic …

Structural basis of species differences between human and experimental animal CYP1A1s in metabolism of 3, 3′, 4, 4′, 5-pentachlorobiphenyl

K Yamazaki, M Suzuki, T Itoh… - The journal of …, 2011 - academic.oup.com
Coplanar polychlorinated biphenyls included in dioxin-like compounds are bio-accumulated
and adversely affect wildlife and human health. Although many researchers have studied …

Identification of noncompetitive protein–ligand interactions for structural optimization

A Tosstorff, JC Cole, R Taylor, SF Harris… - Journal of Chemical …, 2020 - ACS Publications
For efficient structure-guided drug design, it is important to have an excellent understanding
of the quality of interactions between the target receptor and bound ligands. Identification …

[HTML][HTML] Discovery of a small-molecule inhibitor of the TRIP8b–HCN interaction with efficacy in neurons

Y Han, ID Iyamu, MR Clutter, RK Mishra… - Journal of Biological …, 2022 - ASBMB
Major depressive disorder is a critical public health problem with a lifetime prevalence of
nearly 17% in the United States. One potential therapeutic target is the interaction between …

Customizing scoring functions for docking

TA Pham, AN Jain - Journal of Computer-Aided Molecular Design, 2008 - Springer
Empirical scoring functions used in protein-ligand docking calculations are typically trained
on a dataset of complexes with known affinities with the aim of generalizing across different …