Keeping pace with the explosive growth of chemical libraries with structure‐based virtual screening
J Kuan, M Radaeva, A Avenido… - Wiley …, 2023 - Wiley Online Library
Recent efforts to synthetically expand drug‐like chemical libraries have led to the
emergence of unprecedently large virtual databases. This surge of make‐on‐demand …
emergence of unprecedently large virtual databases. This surge of make‐on‐demand …
Streamlining large chemical library docking with artificial intelligence: the PyRMD2Dock approach
M Roggia, B Natale, G Amendola… - Journal of Chemical …, 2023 - ACS Publications
The present contribution introduces a novel computational protocol called PyRMD2Dock,
which combines the Ligand-Based Virtual Screening (LBVS) tool PyRMD with the popular …
which combines the Ligand-Based Virtual Screening (LBVS) tool PyRMD with the popular …
Integrating Artificial Intelligence for Drug Discovery in the Context of Revolutionizing Drug Delivery
Drug development is expensive, time-consuming, and has a high failure rate. In recent
years, artificial intelligence (AI) has emerged as a transformative tool in drug discovery …
years, artificial intelligence (AI) has emerged as a transformative tool in drug discovery …
PepScaf: Harnessing Machine Learning with In Vitro Selection toward De Novo Macrocyclic Peptides against IL-17C/IL-17RE Interaction
S Zhai, Y Tan, C Zhang, CJ Hipolito… - Journal of Medicinal …, 2023 - ACS Publications
The combination of library-based screening and artificial intelligence (AI) has been
accelerating the discovery and optimization of hit ligands. However, the potential of AI to …
accelerating the discovery and optimization of hit ligands. However, the potential of AI to …
[HTML][HTML] Chemoinformatics and artificial intelligence colloquium: progress and challenges in developing bioactive compounds
J Bajorath, AL Chávez-Hernández… - Journal of …, 2022 - Springer
We report the main conclusions of the first Chemoinformatics and Artificial Intelligence
Colloquium, Mexico City, June 15–17, 2022. Fifteen lectures were presented during a virtual …
Colloquium, Mexico City, June 15–17, 2022. Fifteen lectures were presented during a virtual …
[HTML][HTML] CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training
The expertise accumulated in deep neural network-based structure prediction has been
widely transferred to the field of protein–ligand binding pose prediction, thus leading to the …
widely transferred to the field of protein–ligand binding pose prediction, thus leading to the …
New drug approvals for 2022: Synthesis and clinical applications
S Yuan, DD Shen, R Jia, JS Sun… - Medicinal Research …, 2023 - Wiley Online Library
Abstract The US Food and Drug Administration has approved a total of 37 new drugs in
2022, which are composed of 20 chemical entities and 17 biologics. In particular, 20 …
2022, which are composed of 20 chemical entities and 17 biologics. In particular, 20 …
AI for targeted polypharmacology: The next frontier in drug discovery
In drug discovery, targeted polypharmacology, ie, targeting multiple molecular targets with a
single drug, is redefining therapeutic design to address complex diseases. Pre-selected …
single drug, is redefining therapeutic design to address complex diseases. Pre-selected …
Large-scale docking in the cloud
BI Tingle, JJ Irwin - Journal of Chemical Information and Modeling, 2023 - ACS Publications
Molecular docking is a pragmatic approach to exploit protein structures for new ligand
discovery, but the growing size of available chemical space is increasingly challenging to …
discovery, but the growing size of available chemical space is increasingly challenging to …
Large-scale virtual screening for the discovery of SARS-CoV-2 papain-like protease (PLpro) non-covalent inhibitors
The rapid global spread of the SARS-CoV-2 virus facilitated the development of novel direct-
acting antiviral agents (DAAs). The papain-like protease (PLpro) has been proposed as one …
acting antiviral agents (DAAs). The papain-like protease (PLpro) has been proposed as one …