Mapping epigenetic modifications by sequencing technologies
The “epigenetics” concept was first described in 1942. Thus far, chemical modifications on
histones, DNA, and RNA have emerged as three important building blocks of epigenetic …
histones, DNA, and RNA have emerged as three important building blocks of epigenetic …
Interconnections between m6A RNA modification, RNA structure, and protein–RNA complex assembly
S Höfler, O Duss - Life Science Alliance, 2024 - life-science-alliance.org
Protein–RNA complexes exist in many forms within the cell, from stable machines such as
the ribosome to transient assemblies like the spliceosome. All protein–RNA assemblies rely …
the ribosome to transient assemblies like the spliceosome. All protein–RNA assemblies rely …
LSA-ac4C: a hybrid neural network incorporating double-layer LSTM and self-attention mechanism for the prediction of N4-acetylcytidine sites in human mRNA
FL Lai, F Gao - International Journal of Biological Macromolecules, 2023 - Elsevier
Abstract N4-acetylcytidine (ac4C) is a vital constituent of the epitranscriptome and plays a
crucial role in the regulation of mRNA expression. Numerous studies have established …
crucial role in the regulation of mRNA expression. Numerous studies have established …
Workability of mRNA sequencing for predicting protein abundance
EA Ponomarenko, GS Krasnov, OI Kiseleva… - Genes, 2023 - mdpi.com
Transcriptomics methods (RNA-Seq, PCR) today are more routine and reproducible than
proteomics methods, ie, both mass spectrometry and immunochemical analysis. For this …
proteomics methods, ie, both mass spectrometry and immunochemical analysis. For this …
Pitfalls of using sequence databases for heterologous expression studies–a technical review
S Maxeiner, G Krasteva‐Christ… - The Journal of …, 2023 - Wiley Online Library
Synthesis of DNA fragments based on gene sequences that are available in public
resources has become an efficient and affordable method that has gradually replaced …
resources has become an efficient and affordable method that has gradually replaced …
Meta-2OM: A multi-classifier meta-model for the accurate prediction of RNA 2′-O-methylation sites in human RNA
2′-O-methylation (2-OM or Nm) is a widespread RNA modification observed in various
RNA types like tRNA, mRNA, rRNA, miRNA, piRNA, and snRNA, which plays a crucial role …
RNA types like tRNA, mRNA, rRNA, miRNA, piRNA, and snRNA, which plays a crucial role …
Decoding epitranscriptomic regulation of viral infection: mapping of RNA N6-methyladenosine by advanced sequencing technologies
X Fan, Y Zhang, R Guo, K Yue, G Smagghe… - Cellular & Molecular …, 2024 - Springer
Elucidating the intricate interactions between viral pathogens and host cellular machinery
during infection is paramount for understanding pathogenic mechanisms and identifying …
during infection is paramount for understanding pathogenic mechanisms and identifying …
Genetic regulation of m6A RNA methylation and its contribution in human complex diseases
K Chen, J Nan, X Xiong - Science China Life Sciences, 2024 - Springer
Abstract N 6-methyladenosine (m6A) has been established as the most prevalent chemical
modification in message RNA (mRNA), playing an essential role in determining the fate of …
modification in message RNA (mRNA), playing an essential role in determining the fate of …
Adenine Methylation Enhances the Conformational Flexibility of an RNA Hairpin Tetraloop
L Levintov, H Vashisth - The Journal of Physical Chemistry B, 2024 - ACS Publications
The N6-methyladenosine modification is one of the most abundant post-transcriptional
modifications in ribonucleic acid (RNA) molecules. Using molecular dynamics simulations …
modifications in ribonucleic acid (RNA) molecules. Using molecular dynamics simulations …
A role for a Trypanosoma brucei cytosine RNA methyltransferase homolog in ribosomal RNA processing
KT Militello, J Leigh, M Pusateri, LK Read, D Vogler - Plos one, 2024 - journals.plos.org
In Trypanosoma brucei, gene expression is primarily regulated posttranscriptionally making
RNA metabolism critical. T. brucei has an epitranscriptome containing modified RNA bases …
RNA metabolism critical. T. brucei has an epitranscriptome containing modified RNA bases …