[HTML][HTML] Deep learning in drug discovery: an integrative review and future challenges

H Askr, E Elgeldawi, H Aboul Ella… - Artificial Intelligence …, 2023 - Springer
Recently, using artificial intelligence (AI) in drug discovery has received much attention
since it significantly shortens the time and cost of developing new drugs. Deep learning (DL) …

Intelligent computing: the latest advances, challenges, and future

S Zhu, T Yu, T Xu, H Chen, S Dustdar, S Gigan… - Intelligent …, 2023 - spj.science.org
Computing is a critical driving force in the development of human civilization. In recent years,
we have witnessed the emergence of intelligent computing, a new computing paradigm that …

On the frustration to predict binding affinities from protein–ligand structures with deep neural networks

M Volkov, JA Turk, N Drizard, N Martin… - Journal of medicinal …, 2022 - ACS Publications
Accurate prediction of binding affinities from protein–ligand atomic coordinates remains a
major challenge in early stages of drug discovery. Using modular message passing graph …

Learning characteristics of graph neural networks predicting protein–ligand affinities

A Mastropietro, G Pasculli, J Bajorath - Nature Machine Intelligence, 2023 - nature.com
In drug design, compound potency prediction is a popular machine learning application.
Graph neural networks (GNNs) predict ligand affinity from graph representations of protein …

TripletMultiDTI: multimodal representation learning in drug-target interaction prediction with triplet loss function

A Dehghan, P Razzaghi, K Abbasi… - Expert Systems with …, 2023 - Elsevier
In drug discovery, drug-target interaction (DTI) plays a crucial role. Identifying DTI in a wet-
lab experiment is time-consuming, labor-intensive, and costly. Using reliable computational …

Instructmol: Multi-modal integration for building a versatile and reliable molecular assistant in drug discovery

H Cao, Z Liu, X Lu, Y Yao, Y Li - arXiv preprint arXiv:2311.16208, 2023 - arxiv.org
The rapid evolution of artificial intelligence in drug discovery encounters challenges with
generalization and extensive training, yet Large Language Models (LLMs) offer promise in …

Computer especially AI-assisted drug virtual screening and design in traditional Chinese medicine

Y Lin, Y Zhang, D Wang, B Yang, YQ Shen - Phytomedicine, 2022 - Elsevier
Abstract Background Traditional Chinese medicine (TCM), as a significant part of the global
pharmaceutical science, the abundant molecular compounds it contains is a valuable …

Open-source machine learning in computational chemistry

A Hagg, KN Kirschner - Journal of Chemical Information and …, 2023 - ACS Publications
The field of computational chemistry has seen a significant increase in the integration of
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …

Controllable Data Generation by Deep Learning: A Review

S Wang, Y Du, X Guo, B Pan, Z Qin, L Zhao - ACM Computing Surveys, 2024 - dl.acm.org
Designing and generating new data under targeted properties has been attracting various
critical applications such as molecule design, image editing and speech synthesis …

Big data and artificial intelligence in cancer research

X Wu, W Li, H Tu - Trends in cancer, 2024 - cell.com
The field of oncology has witnessed an extraordinary surge in the application of big data and
artificial intelligence (AI). AI development has made multiscale and multimodal data fusion …