Prioritizing Small Sets of Molecules for Synthesis through in‐silico Tools: A Comparison of Common Ranking Methods

M Breznik, Y Ge, JP Bluck, H Briem, DF Hahn… - …, 2023 - Wiley Online Library
Prioritizing molecules for synthesis is a key role of computational methods within medicinal
chemistry. Multiple tools exist for ranking molecules, from the cheap and popular molecular …

Plant membrane assays with cytokinin receptors underpin the unique role of free cytokinin bases as biologically active ligands

SN Lomin, DM Krivosheev, MY Steklov… - Journal of …, 2015 - academic.oup.com
Cytokinin receptors play a key role in cytokinin-dependent processes regulating plant
growth, development, and adaptation; therefore, the functional properties of these receptors …

Understanding TRPV1 activation by ligands: Insights from the binding modes of capsaicin and resiniferatoxin

K Elokely, P Velisetty, L Delemotte… - Proceedings of the …, 2016 - National Acad Sciences
The transient receptor potential cation channel subfamily V member 1 (TRPV1) or vanilloid
receptor 1 is a nonselective cation channel that is involved in the detection and transduction …

Ligand pose and orientational sampling in molecular docking

RG Coleman, M Carchia, T Sterling, JJ Irwin… - PloS one, 2013 - journals.plos.org
Molecular docking remains an important tool for structure-based screening to find new
ligands and chemical probes. As docking ambitions grow to include new scoring function …

Keeping pace with the explosive growth of chemical libraries with structure‐based virtual screening

J Kuan, M Radaeva, A Avenido… - Wiley …, 2023 - Wiley Online Library
Recent efforts to synthetically expand drug‐like chemical libraries have led to the
emergence of unprecedently large virtual databases. This surge of make‐on‐demand …

[HTML][HTML] Investigation of the anti-inflammatory and analgesic activities of promising pyrazole derivative

AA Bekhit, SN Nasralla, EJ El-Agroudy… - European Journal of …, 2022 - Elsevier
The development of new COX-2 inhibitors with analgesic and anti-inflammatory efficacy as
well as minimal gastrointestinal, renal and cardiovascular toxicity, is of vital importance to …

Contemporary computational applications and tools in drug discovery

PB Cox, R Gupta - ACS Medicinal Chemistry Letters, 2022 - ACS Publications
In the past decade or so there has been a dramatic increase in the number of computational
applications and tools that have been developed to enable medicinal chemists to prosecute …

[HTML][HTML] Atherosclerosis fate in the era of tailored functional foods: Evidence-based guidelines elicited from structure-and ligand-based approaches

L Azevedo, MSM Serafim, VG Maltarollo… - Trends in Food Science …, 2022 - Elsevier
Background Atherosclerosis is the primary cause of cardiovascular diseases (CVDs),
contributing to more than 33% of the annual deaths globally. Westernized dietary patterns, a …

Rational design of ASCT2 inhibitors using an integrated experimental-computational approach

RAA Garibsingh, E Ndaru… - Proceedings of the …, 2021 - National Acad Sciences
ASCT2 (SLC1A5) is a sodium-dependent neutral amino acid transporter that controls amino
acid homeostasis in peripheral tissues. In cancer, ASCT2 is up-regulated where it modulates …

Chemo-and bioinformatics resources for in silico drug discovery from medicinal plants beyond their traditional use: a critical review

AA Lagunin, RK Goel, DY Gawande, P Pahwa… - Natural product …, 2014 - pubs.rsc.org
Covering: up to 2014 In silico approaches have been widely recognised to be useful for drug
discovery. Here, we consider the significance of available databases of medicinal plants and …