An overview of mutational and copy number signatures in human cancer

CD Steele, N Pillay, LB Alexandrov - The Journal of Pathology, 2022 - Wiley Online Library
The genome of each cell in the human body is constantly under assault from a plethora of
exogenous and endogenous processes that can damage DNA. If not successfully repaired …

Colorectal cancer develops inherent radiosensitivity that can be predicted using patient-derived organoids

KS Hsu, M Adileh, ML Martin, V Makarov, J Chen, C Wu… - Cancer research, 2022 - AACR
Identifying colorectal cancer patient populations responsive to chemotherapy or
chemoradiation therapy before surgery remains a challenge. Recently validated mouse …

Focal adhesion kinase fine tunes multifaced signals toward breast cancer progression

DC Rigiracciolo, F Cirillo, M Talia, L Muglia, JS Gutkind… - Cancers, 2021 - mdpi.com
Simple Summary Breast cancer is the most common diagnosed malignancy and the main
leading cause of tumor-related death among women worldwide. Thus, several studies have …

[HTML][HTML] Evaluation of a hybrid capture–based pan-cancer panel for analysis of treatment stratifying oncogenic aberrations and processes

LI Kroeze, RM De Voer, EJ Kamping… - The Journal of Molecular …, 2020 - Elsevier
Stratification of patients for targeted and immune-based therapies requires extensive
genomic profiling that enables sensitive detection of clinically relevant variants and …

Deep learning predicts underlying features on pathology images with therapeutic relevance for breast and gastric cancer

R Valieris, L Amaro, CABT Osório, AP Bueno… - Cancers, 2020 - mdpi.com
Simple Summary DNA repair deficiency (DRD) is common in many cancers. This deficiency
contributes to pathogenesis of the disease, but it also presents an opportunity for therapeutic …

Integrating molecular profiles into clinical frameworks through the Molecular Oncology Almanac to prospectively guide precision oncology

B Reardon, ND Moore, NS Moore, E Kofman… - Nature cancer, 2021 - nature.com
Tumor molecular profiling of single gene-variant ('first-order') genomic alterations informs
potential therapeutic approaches. Interactions between such first-order events and global …

Undifferentiated and dedifferentiated metastatic melanomas masquerading as soft tissue sarcomas: mutational signature analysis and immunotherapy response

IS Kasago, WK Chatila, CM Lezcano… - Modern Pathology, 2023 - Elsevier
The distinction between undifferentiated melanoma (UM) or dedifferentiated melanoma
(DM) from undifferentiated or unclassifiable sarcoma can be difficult and requires the careful …

Evolving significance of tumor-normal sequencing in cancer care

D Mandelker, O Ceyhan-Birsoy - Trends in cancer, 2020 - cell.com
Molecular tests assist at various stages of cancer patient management, including providing
diagnosis, predicting prognosis, identifying therapeutic targets, and determining hereditary …

Discovery through clinical sequencing in oncology

MTA Donoghue, AM Schram, DM Hyman, BS Taylor - Nature cancer, 2020 - nature.com
The molecular characterization of tumors now informs clinical cancer care for many patients.
This advent of molecular oncology has been driven by the expanding number of therapeutic …

[HTML][HTML] The diverse molecular profiles of lynch syndrome-associated colorectal cancers are (highly) dependent on underlying germline mismatch repair mutations

NC Helderman, SW Bajwa-ten Broeke… - Critical Reviews in …, 2021 - Elsevier
Lynch syndrome (LS) is a hereditary cancer syndrome that accounts for 3% of all new
colorectal cancer (CRC) cases. Patients carry a germline pathogenic variant in one of the …