Large polarization but small electron transfer for water around Al 3+ in a highly hydrated crystal
Precise molecular-level information on the water molecule is precious, since it affects our
interpretation of the role of water in a range of important applications of aqueous media …
interpretation of the role of water in a range of important applications of aqueous media …
Investigation of polarization effects in the gramicidin A channel from ab initio molecular dynamics simulations
J Timko, S Kuyucak - The Journal of Chemical Physics, 2012 - pubs.aip.org
Polarization is an important component of molecular interactions and is expected to play a
particularly significant role in inhomogeneous environments such as pores and interfaces …
particularly significant role in inhomogeneous environments such as pores and interfaces …
The K+ hydration shell structure in non-polar and low-polar environments
Abstract Knowledge of the structure of hydrated ions in hydrophobic media is crucial for
understanding the mechanism of many biological processes and is relevant to a variety of …
understanding the mechanism of many biological processes and is relevant to a variety of …
Construction of a Polarizable Force Field for Molecular Dynamics Simulation of a NaOTF Water-In-Salt Electrolyte
To model a NaOTF Water-in-Salt (WiS) electrolyte using classical Molecular Dynamics (MD)
simulations, we explore various force fields where atomic polarization is accounted for at …
simulations, we explore various force fields where atomic polarization is accounted for at …
Na+, K+ and Tl+ hydration from QM/MM computations and MD simulations with a polarizable force field
The hydration of three different monovalent cations was studied with a number of theoretical
approaches ranging from classical MD simulations to MD simulations with a polarizable …
approaches ranging from classical MD simulations to MD simulations with a polarizable …
Prediction of the equilibrium properties in food and biological systems with the COSMO-RS model
O Toure - 2014 - theses.hal.science
Food and biological systems are generally multicomponent mixtures (including water,
organic solvents, dissolved solids, dissolved gases, ionic species, macromolecules). The …
organic solvents, dissolved solids, dissolved gases, ionic species, macromolecules). The …
[HTML][HTML] Analysis of fast boundary-integral approximations for modeling electrostatic contributions of molecular binding
AB Kreienkamp, LY Liu, MS Minkara… - Computational and …, 2013 - degruyter.com
We analyze and suggest improvements to a recently developed approximate continuum-
electrostatic model for proteins. The model, called BIBEE/I (boundary-integral based …
electrostatic model for proteins. The model, called BIBEE/I (boundary-integral based …
Lipid Force Field Parameterization for Improved Modeling of Ion-lipid Interactions and Ether Lipids, and Evaluation of the Effects of Long-range Lennard-Jones …
AN Leonard - 2019 - search.proquest.com
Chemical specificity of lipid models used in molecular dynamics simulations is essential to
accurately represent the complexity and diversity of biological membranes. This dissertation …
accurately represent the complexity and diversity of biological membranes. This dissertation …
Экспериментальные и теоретические методы изучения ионных каналов
ДА Турченков, ВС Быстров - Математическая биология и …, 2014 - mathnet.ru
В данной работе проводится обзор основных типов и свойств ионных каналов,
существующих экспериментальных, теоретических подходов и моделей описания их …
существующих экспериментальных, теоретических подходов и моделей описания их …
Computational modeling of protein-ion binding and nucleic acids
Z Jing - 2021 - repositories.lib.utexas.edu
Metal ions and nucleic acids are essential for a variety of biological functions. Metal ions
play roles in enzyme catalysis, signal transduction and muscle contraction, and the …
play roles in enzyme catalysis, signal transduction and muscle contraction, and the …