Large polarization but small electron transfer for water around Al 3+ in a highly hydrated crystal

PD Mitev, I Bakó, A Eriksson… - Physical Chemistry …, 2014 - pubs.rsc.org
Precise molecular-level information on the water molecule is precious, since it affects our
interpretation of the role of water in a range of important applications of aqueous media …

Investigation of polarization effects in the gramicidin A channel from ab initio molecular dynamics simulations

J Timko, S Kuyucak - The Journal of Chemical Physics, 2012 - pubs.aip.org
Polarization is an important component of molecular interactions and is expected to play a
particularly significant role in inhomogeneous environments such as pores and interfaces …

The K+ hydration shell structure in non-polar and low-polar environments

O Ouni, N Derbel, N Jaïdane, MF Ruiz-Lopez - … and Theoretical Chemistry, 2012 - Elsevier
Abstract Knowledge of the structure of hydrated ions in hydrophobic media is crucial for
understanding the mechanism of many biological processes and is relevant to a variety of …

Construction of a Polarizable Force Field for Molecular Dynamics Simulation of a NaOTF Water-In-Salt Electrolyte

M Rezaei, S Sakong, A Groß - 2023 - chemrxiv.org
To model a NaOTF Water-in-Salt (WiS) electrolyte using classical Molecular Dynamics (MD)
simulations, we explore various force fields where atomic polarization is accounted for at …

Na+, K+ and Tl+ hydration from QM/MM computations and MD simulations with a polarizable force field

BB Lev, DR Salahub, SY Noskov - … Sciences: Computational Life Sciences, 2010 - Springer
The hydration of three different monovalent cations was studied with a number of theoretical
approaches ranging from classical MD simulations to MD simulations with a polarizable …

Prediction of the equilibrium properties in food and biological systems with the COSMO-RS model

O Toure - 2014 - theses.hal.science
Food and biological systems are generally multicomponent mixtures (including water,
organic solvents, dissolved solids, dissolved gases, ionic species, macromolecules). The …

[HTML][HTML] Analysis of fast boundary-integral approximations for modeling electrostatic contributions of molecular binding

AB Kreienkamp, LY Liu, MS Minkara… - Computational and …, 2013 - degruyter.com
We analyze and suggest improvements to a recently developed approximate continuum-
electrostatic model for proteins. The model, called BIBEE/I (boundary-integral based …

Lipid Force Field Parameterization for Improved Modeling of Ion-lipid Interactions and Ether Lipids, and Evaluation of the Effects of Long-range Lennard-Jones …

AN Leonard - 2019 - search.proquest.com
Chemical specificity of lipid models used in molecular dynamics simulations is essential to
accurately represent the complexity and diversity of biological membranes. This dissertation …

Экспериментальные и теоретические методы изучения ионных каналов

ДА Турченков, ВС Быстров - Математическая биология и …, 2014 - mathnet.ru
В данной работе проводится обзор основных типов и свойств ионных каналов,
существующих экспериментальных, теоретических подходов и моделей описания их …

Computational modeling of protein-ion binding and nucleic acids

Z Jing - 2021 - repositories.lib.utexas.edu
Metal ions and nucleic acids are essential for a variety of biological functions. Metal ions
play roles in enzyme catalysis, signal transduction and muscle contraction, and the …