Small data machine learning in materials science

P Xu, X Ji, M Li, W Lu - npj Computational Materials, 2023 - nature.com
This review discussed the dilemma of small data faced by materials machine learning. First,
we analyzed the limitations brought by small data. Then, the workflow of materials machine …

Molecular simulation for food protein–ligand interactions: A comprehensive review on principles, current applications, and emerging trends

Z Jin, Z Wei - Comprehensive Reviews in Food Science and …, 2024 - Wiley Online Library
In recent years, investigations on molecular interaction mechanisms between food proteins
and ligands have attracted much interest. The interaction mechanisms can supply much …

Synthesis and Evaluation of Quinazolin‐4(3H)‐one Derivatives as Multitarget Metabolic Enzyme Inhibitors: A Biochemistry‐Oriented Drug Design

FS Tokalı, P Taslimi, M Sadeghi, H Şenol - ChemistrySelect, 2023 - Wiley Online Library
In this study, imines bearing quinazolin‐4 (3H)‐one were synthesized and their inhibitory
properties were investigated against some metabolic enzymes including …

A fully differentiable ligand pose optimization framework guided by deep learning and a traditional scoring function

Z Wang, L Zheng, S Wang, M Lin, Z Wang… - Briefings in …, 2023 - academic.oup.com
The recently reported machine learning-or deep learning-based scoring functions (SFs)
have shown exciting performance in predicting protein–ligand binding affinities with fruitful …

Deep learning drives efficient discovery of novel antihypertensive peptides from soybean protein isolate

Y Zhang, Z Dai, X Zhao, C Chen, S Li, Y Meng… - Food Chemistry, 2023 - Elsevier
As a potential and effective substitute for the drugs of antihypertension, the food-derived
antihypertensive peptides have arisen great interest in scholars recently. However, the …

[HTML][HTML] Pesticide informatics expands the opportunity for structure-based molecular design and optimization

W Zhao, Y Huang, GF Hao - Advanced Agrochem, 2022 - Elsevier
The discovery process of pesticides is confronting more and more difficult obstacles,
including the rising costs of materials and labor, which are costly and time-consuming …

Design and application of lysosomal targeting pH-sensitive β-galactosidase fluorescent probe

S Chen, X Ma, L Wang, Y Wu, Y Wang, W Fan… - Sensors and Actuators B …, 2023 - Elsevier
Abstract β-galactosidase is a lysosomal enzyme that plays an essential biological function
as a cancer marker in many physiological and pathological processes. Therefore, it is of …

Structures of the SARS-CoV-2 spike glycoprotein and applications for novel drug development

XH Liu, T Cheng, BY Liu, J Chi, T Shu… - Frontiers in …, 2022 - frontiersin.org
COVID-19 caused by SARS-CoV-2 has raised a health crisis worldwide. The high morbidity
and mortality associated with COVID-19 and the lack of effective drugs or vaccines for SARS …

Protein function analysis through machine learning

C Avery, J Patterson, T Grear, T Frater, DJ Jacobs - Biomolecules, 2022 - mdpi.com
Machine learning (ML) has been an important arsenal in computational biology used to
elucidate protein function for decades. With the recent burgeoning of novel ML methods and …

Systematic improvement of the performance of machine learning scoring functions by incorporating features of protein-bound water molecules

X Qu, L Dong, J Zhang, Y Si… - Journal of Chemical …, 2022 - ACS Publications
Water molecules at the ligand–protein interfaces play crucial roles in the binding of the
ligands, but the behavior of protein-bound water is largely ignored in many currently used …