Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR
Quantitative structure–activity relationship (QSAR) modelling, an approach that was
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …
Evaluation guidelines for machine learning tools in the chemical sciences
Abstract Machine learning (ML) promises to tackle the grand challenges in chemistry and
speed up the generation, improvement and/or ordering of research hypotheses. Despite the …
speed up the generation, improvement and/or ordering of research hypotheses. Despite the …
Galactica: A large language model for science
Information overload is a major obstacle to scientific progress. The explosive growth in
scientific literature and data has made it ever harder to discover useful insights in a large …
scientific literature and data has made it ever harder to discover useful insights in a large …
Sample efficiency matters: a benchmark for practical molecular optimization
Molecular optimization is a fundamental goal in the chemical sciences and is of central
interest to drug and material design. In recent years, significant progress has been made in …
interest to drug and material design. In recent years, significant progress has been made in …
[HTML][HTML] Integrating structure-based approaches in generative molecular design
Generative molecular design for drug discovery and development has seen a recent
resurgence promising to improve the efficiency of the design-make-test-analyse cycle; by …
resurgence promising to improve the efficiency of the design-make-test-analyse cycle; by …
Molecular simulation for food protein–ligand interactions: A comprehensive review on principles, current applications, and emerging trends
Z Jin, Z Wei - Comprehensive Reviews in Food Science and …, 2024 - Wiley Online Library
In recent years, investigations on molecular interaction mechanisms between food proteins
and ligands have attracted much interest. The interaction mechanisms can supply much …
and ligands have attracted much interest. The interaction mechanisms can supply much …
Application of molecular simulation methods in food science: status and prospects
Y Yu, S Xu, R He, G Liang - Journal of Agricultural and Food …, 2023 - ACS Publications
Molecular simulation methods, such as molecular docking, molecular dynamic (MD)
simulation, and quantum chemical (QC) calculation, have become popular as …
simulation, and quantum chemical (QC) calculation, have become popular as …
Exploring chemical space with score-based out-of-distribution generation
A well-known limitation of existing molecular generative models is that the generated
molecules highly resemble those in the training set. To generate truly novel molecules that …
molecules highly resemble those in the training set. To generate truly novel molecules that …
Artificial intelligence-assisted repurposing of lubiprostone alleviates tubulointerstitial fibrosis
Tubulointerstitial fibrosis (TIF) is the most prominent cause which leads to chronic kidney
disease (CKD) and end-stage renal failure. Despite extensive research, there have been …
disease (CKD) and end-stage renal failure. Despite extensive research, there have been …
Open-source machine learning in computational chemistry
A Hagg, KN Kirschner - Journal of Chemical Information and …, 2023 - ACS Publications
The field of computational chemistry has seen a significant increase in the integration of
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …