[HTML][HTML] Drug design by pharmacophore and virtual screening approach

D Giordano, C Biancaniello, MA Argenio, A Facchiano - Pharmaceuticals, 2022 - mdpi.com
Computer-aided drug discovery techniques reduce the time and the costs needed to
develop novel drugs. Their relevance becomes more and more evident with the needs due …

Use of molecular docking computational tools in drug discovery

F Stanzione, I Giangreco, JC Cole - Progress in medicinal chemistry, 2021 - Elsevier
Molecular docking has become an important component of the drug discovery process.
Since first being developed in the 1980s, advancements in the power of computer hardware …

Ogb-lsc: A large-scale challenge for machine learning on graphs

W Hu, M Fey, H Ren, M Nakata, Y Dong… - arXiv preprint arXiv …, 2021 - arxiv.org
Enabling effective and efficient machine learning (ML) over large-scale graph data (eg,
graphs with billions of edges) can have a great impact on both industrial and scientific …

[HTML][HTML] A review on applications of computational methods in drug screening and design

X Lin, X Li, X Lin - Molecules, 2020 - mdpi.com
Drug development is one of the most significant processes in the pharmaceutical industry.
Various computational methods have dramatically reduced the time and cost of drug …

[HTML][HTML] Structure-based virtual screening: from classical to artificial intelligence

EHB Maia, LC Assis, TA De Oliveira… - Frontiers in …, 2020 - frontiersin.org
The drug development process is a major challenge in the pharmaceutical industry since it
takes a substantial amount of time and money to move through all the phases of developing …

[HTML][HTML] Molecular docking: shifting paradigms in drug discovery

L Pinzi, G Rastelli - International journal of molecular sciences, 2019 - mdpi.com
Molecular docking is an established in silico structure-based method widely used in drug
discovery. Docking enables the identification of novel compounds of therapeutic interest …

SARS-CoV-2 simulations go exascale to capture spike opening and reveal cryptic pockets across the proteome

MI Zimmerman, G Bowman - Biophysical Journal, 2021 - cell.com
The SARS-CoV-2/COVID-19 pandemic continues to threaten global health and
socioeconomic stability. Experiments have revealed snapshots of many viral components …

Bioinformatics approaches to discovering food-derived bioactive peptides: Reviews and perspectives

Z Du, J Comer, Y Li - TrAC Trends in Analytical Chemistry, 2023 - Elsevier
Food-derived bioactive peptides (FBPs) are gaining interest due to their great potential in
agricultural byproduct valorization and high-activity peptide screening. The introduction of …

[HTML][HTML] A structure-based drug discovery paradigm

M Batool, B Ahmad, S Choi - International journal of molecular sciences, 2019 - mdpi.com
Structure-based drug design is becoming an essential tool for faster and more cost-efficient
lead discovery relative to the traditional method. Genomic, proteomic, and structural studies …

Structure-based drug design with equivariant diffusion models

A Schneuing, Y Du, C Harris, A Jamasb… - arXiv preprint arXiv …, 2022 - arxiv.org
Structure-based drug design (SBDD) aims to design small-molecule ligands that bind with
high affinity and specificity to pre-determined protein targets. In this paper, we formulate …