Roles of trans-lesion synthesis (TLS) DNA polymerases in tumorigenesis and cancer therapy

J Anand, L Chiou, C Sciandra, X Zhang, J Hong… - NAR …, 2023 - academic.oup.com
DNA damage tolerance and mutagenesis are hallmarks and enabling characteristics of
neoplastic cells that drive tumorigenesis and allow cancer cells to resist therapy. The 'Y …

Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor

SMA Islam, M Díaz-Gay, Y Wu, M Barnes, R Vangara… - Cell genomics, 2022 - cell.com
Mutational signature analysis is commonly performed in cancer genomic studies. Here, we
present SigProfilerExtractor, an automated tool for de novo extraction of mutational …

Therapy-related myelodysplastic syndromes in the genomics era

A Renneville, E Bernard, JB Micol - Bulletin du Cancer, 2023 - Elsevier
Therapy-related myelodysplastic syndromes (t-MDS) represent a heterogeneous group of
malignancies that arise as a late complication of prior exposure to chemotherapy and/or …

Analysis of 10,478 cancer genomes identifies candidate driver genes and opportunities for precision oncology

B Kinnersley, A Sud, A Everall, AJ Cornish, D Chubb… - Nature Genetics, 2024 - nature.com
Tumor genomic profiling is increasingly seen as a prerequisite to guide the treatment of
patients with cancer. To explore the value of whole-genome sequencing (WGS) in …

Urothelial bladder carcinomas with high tumor mutation burden have a better prognosis and targetable molecular defects beyond immunotherapies

IA Voutsadakis - Current Oncology, 2022 - mdpi.com
Background: Urothelial bladder carcinomas had traditionally been difficult to treat cancers,
with high morbidity and mortality rates when invasive and metastatic. In recent years …

[HTML][HTML] The co-inhibitory immune checkpoint proteins B7-H1 (PD-L1) and B7-H4 in high grade glioma: From bench to bedside

Y Qi, X Huang, C Ji, C Wang, Y Yao - Translational Oncology, 2024 - Elsevier
Co-inhibitory immune checkpoints play a crucial role in tumor progression, and PD-1/PD-L1
inhibitor has been a breakthrough for treating multiple refractory tumors in last decade …

Prognostic Mutational Signatures of NSCLC Patients treated with chemotherapy, immunotherapy and chemoimmunotherapy

MR Smith, Y Wang, R D'Agostino Jr, Y Liu… - NPJ Precision …, 2023 - nature.com
Different types of therapy are currently being used to treat non-small cell lung cancer
(NSCLC) depending on the stage of tumor and the presence of potentially druggable …

Bulge-loop tuned entropy-driven catalytic reaction and tag-encoded barcodes for multiplexed mutation detection

W Luo, T Wang, Z Weng, S Bai, L Zhang, Y Wu… - Sensors and Actuators B …, 2022 - Elsevier
Sensitive and specific detection of single nucleotide variants (SNVs) has great potential for
disease diagnosis and prognosis. Hybridization probes based on DNA strand displacement …

Neural component of the tumor microenvironment in pancreatic ductal adenocarcinoma

M Gola, A Sejda, J Godlewski, M Cieślak, A Starzyńska - Cancers, 2022 - mdpi.com
Simple Summary Pancreatic ductal adenocarcinoma (PDAC) remains one of the most lethal
cancers worldwide, with a poor prognosis and an increasing incidence. Recently, the tumor …

[HTML][HTML] Development and validation of AI-assisted transcriptomic signatures to personalize adjuvant chemotherapy in patients with pancreatic ductal adenocarcinoma

N Fraunhoffer, P Hammel, T Conroy, R Nicolle… - Annals of …, 2024 - Elsevier
Background After surgical resection of pancreatic ductal adenocarcinoma (PDAC), patients
are predominantly treated with adjuvant chemotherapy, commonly consisting of gemcitabine …