The iPlant collaborative: cyberinfrastructure for plant biology

SA Goff, M Vaughn, S McKay, E Lyons… - Frontiers in plant …, 2011 - frontiersin.org
The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF)
funded project that aims to create an innovative, comprehensive, and foundational …

The comparative toxicogenomics database: update 2019

AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) is a premier
public resource for literature-based, manually curated associations between chemicals …

The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins

AD Rouillard, GW Gundersen, NF Fernandez… - Database, 2016 - academic.oup.com
Genomics, epigenomics, transcriptomics, proteomics and metabolomics efforts rapidly
generate a plethora of data on the activity and levels of biomolecules within mammalian …

The comparative toxicogenomics database: update 2017

AP Davis, CJ Grondin, RJ Johnson… - Nucleic acids …, 2017 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) provides
information about interactions between chemicals and gene products, and their …

The comparative toxicogenomics database: update 2013

AP Davis, CG Murphy, R Johnson, JM Lay… - Nucleic acids …, 2013 - academic.oup.com
Abstract The Comparative Toxicogenomics Database (CTD; http://ctdbase. org/) provides
information about interactions between environmental chemicals and gene products and …

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

J Ison, M Kalaš, I Jonassen, D Bolser, M Uludag… - …, 2013 - academic.oup.com
Motivation: Advancing the search, publication and integration of bioinformatics tools and
resources demands consistent machine-understandable descriptions. A comprehensive …

The 2012 nucleic acids research database issue and the online molecular biology database collection

MY Galperin, XM Fernández-Suarez - Nucleic acids research, 2012 - academic.oup.com
Abstract The 19th annual Database Issue of Nucleic Acids Research features descriptions of
92 new online databases covering various areas of molecular biology and 100 papers …

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

T Katayama, MD Wilkinson, KF Aoki-Kinoshita… - Journal of biomedical …, 2014 - Springer
The application of semantic technologies to the integration of biological data and the
interoperability of bioinformatics analysis and visualization tools has been the common …

BIOPEP database of sensory peptides and amino acids

A Iwaniak, P Minkiewicz, M Darewicz… - Food Research …, 2016 - Elsevier
Peptides and amino acids belong to compounds that influence the taste of foods. The aim of
this study was to develop a database of sensory peptides and amino acids. Information …

Identifiers. org and MIRIAM Registry: community resources to provide persistent identification

N Juty, N Le Novere, C Laibe - Nucleic acids research, 2012 - academic.oup.com
Abstract The Minimum Information Required in the Annotation of Models Registry
(http://www. ebi. ac. uk/miriam) provides unique, perennial and location-independent …