AB‐bind: antibody binding mutational database for computational affinity predictions
S Sirin, JR Apgar, EM Bennett, AE Keating - Protein Science, 2016 - Wiley Online Library
Antibodies (Abs) are a crucial component of the immune system and are often used as
diagnostic and therapeutic agents. The need for high‐affinity and high‐specificity antibodies …
diagnostic and therapeutic agents. The need for high‐affinity and high‐specificity antibodies …
A GROMOS-compatible force field for small organic molecules in the condensed phase: The 2016H66 parameter set
BAC Horta, PT Merz, PFJ Fuchs, J Dolenc… - Journal of chemical …, 2016 - ACS Publications
This article reports on the calibration and validation of a new GROMOS-compatible
parameter set 2016H66 for small organic molecules in the condensed phase. The …
parameter set 2016H66 for small organic molecules in the condensed phase. The …
Perspective: Alchemical free energy calculations for drug discovery
DL Mobley, PV Klimovich - The Journal of chemical physics, 2012 - pubs.aip.org
Computational techniques see widespread use in pharmaceutical drug discovery, but
typically prove unreliable in predicting trends in protein-ligand binding. Alchemical free …
typically prove unreliable in predicting trends in protein-ligand binding. Alchemical free …
Molecular recognition and ligand association
R Baron, JA McCammon - Annual review of physical chemistry, 2013 - annualreviews.org
We review recent developments in our understanding of molecular recognition and ligand
association, focusing on two major viewpoints:(a) studies that highlight new physical insight …
association, focusing on two major viewpoints:(a) studies that highlight new physical insight …
A general guidebook for the theoretical prediction of physicochemical properties of chemicals for regulatory purposes
The REACH regulation (recent EU regulation for “Registration, Evaluation, Authorization,
and Restriction of Chemicals”) entered its product-recording phase after December 2008. 1 …
and Restriction of Chemicals”) entered its product-recording phase after December 2008. 1 …
[HTML][HTML] The new microtubule-targeting agent SIX2G induces immunogenic cell death in multiple myeloma
Microtubule-targeting agents (MTAs) are effective drugs for cancer treatment. A novel diaryl
[1, 2] oxazole class of compounds binding the colchicine site was synthesized as cis …
[1, 2] oxazole class of compounds binding the colchicine site was synthesized as cis …
Biomolecular force field parameterization via atoms-in-molecule electron density partitioning
DJ Cole, JZ Vilseck, J Tirado-Rives… - Journal of chemical …, 2016 - ACS Publications
Molecular mechanics force fields, which are commonly used in biomolecular modeling and
computer-aided drug design, typically treat nonbonded interactions using a limited library of …
computer-aided drug design, typically treat nonbonded interactions using a limited library of …
Design and preclinical characterization program toward asundexian (BAY 2433334), an oral factor XIa inhibitor for the prevention and treatment of thromboembolic …
S Roehrig, J Ackerstaff, E Jiménez Núñez… - Journal of medicinal …, 2023 - ACS Publications
Activated coagulation factor XI (FXIa) is a highly attractive antithrombotic target as it
contributes to the development and progression of thrombosis but is thought to play only a …
contributes to the development and progression of thrombosis but is thought to play only a …
Comparisons of different force fields in conformational analysis and searching of organic molecules: A review
This review aims to examine literature where different force fields are compared by their
performances in conformational analysis and searching of organic molecules …
performances in conformational analysis and searching of organic molecules …
[HTML][HTML] Comparative immunogenicity of the recombinant receptor-binding domain of protein S SARS-CoV-2 obtained in prokaryotic and mammalian expression …
IA Merkuleva, DN Shcherbakov, MB Borgoyakova… - Vaccines, 2022 - mdpi.com
The receptor-binding domain (RBD) of the protein S SARS-CoV-2 is considered to be one of
the appealing targets for developing a vaccine against COVID-19. The choice of an …
the appealing targets for developing a vaccine against COVID-19. The choice of an …