Antimicrobial abietane-type diterpenoids from Torreya grandis

JJ Cui, WJ Li, CL Wang, YQ Huang, W Lin, B Zhou… - Phytochemistry, 2022 - Elsevier
Twelve undescribed abietane-type diterpenoids, along with ten known analogues were
isolated from the twigs and leaves of Torreya grandis var. merrillii Hu. Their structures were …

Update to the general amber force field for small solutes with an emphasis on free energies of hydration

JPM Jambeck, AP Lyubartsev - The Journal of Physical Chemistry …, 2014 - ACS Publications
An approach to a straightforward reparametrization of the general AMBER force field (GAFF)
for small organic solutes and druglike compounds is presented. The parametrization is …

Update on phosphate and charged post‐translationally modified amino acid parameters in the GROMOS force field

C Margreitter, MM Reif… - Journal of computational …, 2017 - Wiley Online Library
In this study, we propose newly derived parameters for phosphate ions in the context of the
GROMOS force field parameter sets. The non‐bonded parameters used up to now lead to a …

[HTML][HTML] Discovery of potential FGFR3 inhibitors via QSAR, pharmacophore modeling, virtual screening and molecular docking studies against bladder cancer

M Ganji, S Bakhshi, A Shoari… - Journal of Translational …, 2023 - Springer
Background Fibroblast growth factor receptor 3 is known as a favorable aim in vast range of
cancers, particularly in bladder cancer treatment. Pharmacophore and QSAR modeling …

Could MM-GBSA be accurate enough for calculation of absolute protein/ligand binding free energies?

C Mulakala, VN Viswanadhan - Journal of Molecular Graphics and …, 2013 - Elsevier
Implicit solvation methods such as MM-GBSA, when applied to evaluating protein/ligand
binding free energies, are widely believed to be accurate only for the estimation of relative …

Topology automated force-field interactions (TAFFI): a framework for developing transferable force fields

B Seo, ZY Lin, Q Zhao, MA Webb… - Journal of Chemical …, 2021 - ACS Publications
Force-field development has undergone a revolution in the past decade with the
proliferation of quantum chemistry based parametrizations and the introduction of machine …

[HTML][HTML] Exploring the potential of propanamide-sulfonamide based drug conjugates as dual inhibitors of urease and cyclooxygenase-2: biological and their in silico …

S Ahmad, M Abdul Qadir, M Ahmed, M Imran… - Frontiers in …, 2023 - frontiersin.org
Derivative synthesis has been a crucial method for altering the effects of already-approved
medications, especially to lessen adverse effects and enhance results. Making use of this …

[HTML][HTML] Investigating single amino acid substitutions in PIM1 kinase: A structural genomics approach

A Shafie, S Khan, S Batra, F Anjum, T Mohammad… - Plos one, 2021 - journals.plos.org
PIM1, is a serine/threonine proto-oncogene kinase, involved in many biological functions,
including cell survival, proliferation, and differentiation, thus play a key role in oncogenesis …

Antifungal azoles as tetracycline resistance modifiers in Staphylococcus aureus

N Mahey, R Tambat, DK Verma… - Applied and …, 2021 - Am Soc Microbiol
Staphylococcus aureus has developed resistance to antimicrobials since their first use. The
S. aureus major facilitator superfamily (MFS) efflux pump Tet (K) contributes to resistance to …

Evaluation of CM5 charges for condensed-phase modeling

JZ Vilseck, J Tirado-Rives… - Journal of Chemical …, 2014 - ACS Publications
The recently developed Charge Model 5 (CM5) is tested for its utility in condensed-phase
simulations. The CM5 approach, which derives partial atomic charges from Hirshfeld …