Novel propargylamine-based inhibitors of cholinesterases and monoamine oxidases: Synthesis, biological evaluation and docking study

M Krátký, QA Vu, Š Štěpánková, A Maruca, TB Silva… - Bioorganic …, 2021 - Elsevier
A combination of several pharmacophores in one molecule has been successfully used for
multi-target-directed ligands (MTDL) design. New propargylamine substituted derivatives …

Chromenone derivatives as a versatile scaffold with dual mode of inhibition of HIV-1 reverse transcriptase-associated Ribonuclease H function and integrase activity

F Esposito, FA Ambrosio, R Maleddu, G Costa… - European Journal of …, 2019 - Elsevier
A number of compounds targeting different processes of the Human Immunodeficiency Virus
type 1 (HIV-1) life cycle have been developed in the continuing fight against AIDS. Coumarin …

[HTML][HTML] A novel phenylpyrrolidine derivative: synthesis and effect on cognitive functions in rats with experimental ishemic stroke

DA Borozdenko, AA Ezdoglian, TA Shmigol… - Molecules, 2021 - mdpi.com
We performed an in silico, in vitro, and in vivo assessment of a potassium 2-[2-(2-oxo-4-
phenylpyrrolidin-1-yl) acetamido] ethanesulfonate (compound 1) as a potential prodrug for …

[HTML][HTML] Zika virus NS4A cytosolic region (residues 1–48) is an intrinsically disordered domain and folds upon binding to lipids

A Kumar, P Kumar, R Giri - Virology, 2020 - Elsevier
In flaviviruses, the NS4A is an integral transmembrane protein that contributes to form virus-
induced membrane curvature. However, structural features of NS4A are not documented in …

[HTML][HTML] A machine learning based intramolecular potential for a flexible organic molecule

DJ Cole, L Mones, G Csányi - Faraday Discussions, 2020 - pubs.rsc.org
Quantum mechanical predictive modelling in chemistry and biology is often hindered by the
long time scales and large system sizes required of the computational model. Here, we …

[HTML][HTML] Microbe-Derived Indole Metabolite Demonstrates Potent Multidrug Efflux Pump Inhibition in Staphylococcus aureus

R Tambat, M Jangra, N Mahey, N Chandal… - Frontiers in …, 2019 - frontiersin.org
Efflux pumps are always at the forefront of bacterial multidrug resistance and account for the
failure of antibiotics. The present study explored the potential of 2-(2-Aminophenyl) indole …

[HTML][HTML] Proteomics-based vaccine targets annotation and design of multi-epitope vaccine against antibiotic-resistant Streptococcus gallolyticus

P Chao, X Zhang, L Zhang, A Yang, Y Wang… - Scientific Reports, 2024 - nature.com
Streptococcus gallolyticus is a non-motile, gram-positive bacterium that causes infective
endocarditis. S. gallolyticus has developed resistance to existing antibiotics, and no vaccine …

Automated design of macrocycles for therapeutic applications: from small molecules to peptides and proteins

D Sindhikara, M Wagner, P Gkeka… - Journal of Medicinal …, 2020 - ACS Publications
Macrocycles and cyclic peptides are increasingly attractive therapeutic modalities as they
often have improved affinity, are able to bind to extended protein surfaces, and otherwise …

Identification of potential human COX-2 inhibitors using computational modeling and molecular dynamics simulations

S Beura, P Chetti - Journal of Molecular Structure, 2020 - Elsevier
To explore the structure-property relationship in a set of molecules against Cyclooxygenase-
2 (COX-2), pharmacophore modeling, molecular docking and 3D-QSAR studies were …

TIES 20: Relative binding free energy with a flexible superimposition algorithm and partial ring morphing

MK Bieniek, AP Bhati, S Wan… - Journal of chemical …, 2021 - ACS Publications
The TIES (Thermodynamic Integration with Enhanced Sampling) protocol is a formally exact
alchemical approach in computational chemistry to the calculation of relative binding free …