[HTML][HTML] A review on compound-protein interaction prediction methods: data, format, representation and model
There has recently been a rapid progress in computational methods for determining protein
targets of small molecule drugs, which will be termed as compound protein interaction (CPI) …
targets of small molecule drugs, which will be termed as compound protein interaction (CPI) …
Systems pharmacology in small molecular drug discovery
Drug discovery is a risky, costly and time-consuming process depending on multidisciplinary
methods to create safe and effective medicines. Although considerable progress has been …
methods to create safe and effective medicines. Although considerable progress has been …
Interaction prediction in structure-based virtual screening using deep learning
We introduce a deep learning architecture for structure-based virtual screening that
generates fixed-sized fingerprints of proteins and small molecules by applying learnable …
generates fixed-sized fingerprints of proteins and small molecules by applying learnable …
Predicting drug–target interactions with multi-information fusion
Identifying potential associations between drugs and targets is a critical prerequisite for
modern drug discovery and repurposing. However, predicting these associations is difficult …
modern drug discovery and repurposing. However, predicting these associations is difficult …
Predicting drug–target interaction for new drugs using enhanced similarity measures and super-target clustering
Predicting drug–target interaction using computational approaches is an important step in
drug discovery and repositioning. To predict whether there will be an interaction between a …
drug discovery and repositioning. To predict whether there will be an interaction between a …
Deep learning from physicochemical information of concrete with an artificial language for property prediction and reaction discovery
Existing machine learning-based approaches to investigate and design concrete mainly use
the mixture design variables to predict concrete properties and do not consider the …
the mixture design variables to predict concrete properties and do not consider the …
Large-scale prediction of drug-target interaction: a data-centric review
The prediction of drug-target interactions (DTIs) is of extraordinary significance to modern
drug discovery in terms of suggesting new drug candidates and repositioning old drugs …
drug discovery in terms of suggesting new drug candidates and repositioning old drugs …
A unified solution for different scenarios of predicting drug-target interactions via triple matrix factorization
JY Shi, AQ Zhang, SW Zhang, KT Mao, SM Yiu - BMC systems biology, 2018 - Springer
Background During the identification of potential candidates, computational prediction of
drug-target interactions (DTIs) is important to subsequent expensive validation in wet-lab …
drug-target interactions (DTIs) is important to subsequent expensive validation in wet-lab …
Functional and DNA–protein binding studies of WRKY transcription factors and their expression analysis in response to biotic and abiotic stress in wheat (Triticum …
WRKY, a plant-specific transcription factor family, plays vital roles in pathogen defense,
abiotic stress, and phytohormone signalling. Little is known about the roles and function of …
abiotic stress, and phytohormone signalling. Little is known about the roles and function of …
Laying in silico pipelines for drug repositioning: a paradigm in ensemble analysis for neurodegenerative diseases
Highlights•Computational drug repositioning is a serious support tool to shortlist candidate
drugs.•Up-to-date review of drug repositioning methodologies.•Example of a drug …
drugs.•Up-to-date review of drug repositioning methodologies.•Example of a drug …