Designing macrocyclic disulfide-rich peptides for biotechnological applications

CK Wang, DJ Craik - Nature chemical biology, 2018 - nature.com
Bioactive peptides have potential as drug leads, but turning them into drugs is a challenge
because of their typically poor metabolic stability. Molecular grafting is one approach to …

Applying thermodynamic profiling in lead finding and optimization

G Klebe - Nature Reviews Drug Discovery, 2015 - nature.com
Small-molecule drug discovery involves the optimization of various physicochemical
properties of a ligand, particularly its binding affinity for its target receptor (or receptors). In …

The receptor for advanced glycation end products (RAGE) specifically recognizes methylglyoxal-derived AGEs

J Xue, R Ray, D Singer, D Böhme, DS Burz, V Rai… - Biochemistry, 2014 - ACS Publications
Diabetes-induced hyperglycemia increases the extracellular concentration of methylglyoxal.
Methylglyoxal-derived hydroimidazolones (MG-H) form advanced glycation end products …

Applications of isothermal titration calorimetry–the research and technical developments from 2011 to 2015

RJ Falconer - Journal of Molecular Recognition, 2016 - Wiley Online Library
Isothermal titration calorimetry is a widely used biophysical technique for studying the
formation or dissociation of molecular complexes. Over the last 5 years, much work has …

A look at ligand binding thermodynamics in drug discovery

R Claveria-Gimeno, S Vega, O Abian… - Expert Opinion on …, 2017 - Taylor & Francis
Introduction: Drug discovery is a challenging endeavor requiring the interplay of many
different research areas. Gathering information on ligand binding thermodynamics may help …

Rational design of thermodynamic and kinetic binding profiles by optimizing surface water networks coating protein-bound ligands

SG Krimmer, J Cramer, M Betz, V Fridh… - Journal of medicinal …, 2016 - ACS Publications
A previously studied congeneric series of thermolysin inhibitors addressing the solvent-
accessible S2′ pocket with different hydrophobic substituents showed modulations of the …

Biophysical and molecular modeling evidences for the binding of sulfa molecules with hemoglobin

A Mavani, A Ovung, S Luikham… - Journal of …, 2023 - Taylor & Francis
The molecular mechanism of the heme protein, hemoglobin (Hb) interaction with sulfa
molecule, sulfadiazine (SDZ) has been investigated through spectroscopic, neutron …

Methyl, ethyl, propyl, butyl: futile but not for water, as the correlation of structure and thermodynamic signature shows in a congeneric series of thermolysin inhibitors

SG Krimmer, M Betz, A Heine, G Klebe - ChemMedChem, 2014 - Wiley Online Library
Water is ubiquitously present in any biological system and has therefore to be regarded as
an additional binding partner in the protein–ligand binding process. Upon complex …

Structural insights into inhibition of Escherichia coli penicillin-binding protein 1B

DT King, GA Wasney, M Nosella, A Fong… - Journal of Biological …, 2017 - ASBMB
In Escherichia coli, the peptidoglycan cell wall is synthesized by bifunctional penicillin-
binding proteins such as PBP1b that have both transpeptidase and transglycosylase …

Thermodynamics of protein–ligand interactions as a reference for computational analysis: how to assess accuracy, reliability and relevance of experimental data

SG Krimmer, G Klebe - Journal of computer-aided molecular design, 2015 - Springer
For a conscientious interpretation of thermodynamic parameters (Gibbs free energy,
enthalpy and entropy) obtained by isothermal titration calorimetry (ITC), it is necessary to first …