Designing macrocyclic disulfide-rich peptides for biotechnological applications
Bioactive peptides have potential as drug leads, but turning them into drugs is a challenge
because of their typically poor metabolic stability. Molecular grafting is one approach to …
because of their typically poor metabolic stability. Molecular grafting is one approach to …
Applying thermodynamic profiling in lead finding and optimization
G Klebe - Nature Reviews Drug Discovery, 2015 - nature.com
Small-molecule drug discovery involves the optimization of various physicochemical
properties of a ligand, particularly its binding affinity for its target receptor (or receptors). In …
properties of a ligand, particularly its binding affinity for its target receptor (or receptors). In …
The receptor for advanced glycation end products (RAGE) specifically recognizes methylglyoxal-derived AGEs
Diabetes-induced hyperglycemia increases the extracellular concentration of methylglyoxal.
Methylglyoxal-derived hydroimidazolones (MG-H) form advanced glycation end products …
Methylglyoxal-derived hydroimidazolones (MG-H) form advanced glycation end products …
Applications of isothermal titration calorimetry–the research and technical developments from 2011 to 2015
RJ Falconer - Journal of Molecular Recognition, 2016 - Wiley Online Library
Isothermal titration calorimetry is a widely used biophysical technique for studying the
formation or dissociation of molecular complexes. Over the last 5 years, much work has …
formation or dissociation of molecular complexes. Over the last 5 years, much work has …
A look at ligand binding thermodynamics in drug discovery
Introduction: Drug discovery is a challenging endeavor requiring the interplay of many
different research areas. Gathering information on ligand binding thermodynamics may help …
different research areas. Gathering information on ligand binding thermodynamics may help …
Rational design of thermodynamic and kinetic binding profiles by optimizing surface water networks coating protein-bound ligands
SG Krimmer, J Cramer, M Betz, V Fridh… - Journal of medicinal …, 2016 - ACS Publications
A previously studied congeneric series of thermolysin inhibitors addressing the solvent-
accessible S2′ pocket with different hydrophobic substituents showed modulations of the …
accessible S2′ pocket with different hydrophobic substituents showed modulations of the …
Biophysical and molecular modeling evidences for the binding of sulfa molecules with hemoglobin
A Mavani, A Ovung, S Luikham… - Journal of …, 2023 - Taylor & Francis
The molecular mechanism of the heme protein, hemoglobin (Hb) interaction with sulfa
molecule, sulfadiazine (SDZ) has been investigated through spectroscopic, neutron …
molecule, sulfadiazine (SDZ) has been investigated through spectroscopic, neutron …
Methyl, ethyl, propyl, butyl: futile but not for water, as the correlation of structure and thermodynamic signature shows in a congeneric series of thermolysin inhibitors
SG Krimmer, M Betz, A Heine, G Klebe - ChemMedChem, 2014 - Wiley Online Library
Water is ubiquitously present in any biological system and has therefore to be regarded as
an additional binding partner in the protein–ligand binding process. Upon complex …
an additional binding partner in the protein–ligand binding process. Upon complex …
Structural insights into inhibition of Escherichia coli penicillin-binding protein 1B
DT King, GA Wasney, M Nosella, A Fong… - Journal of Biological …, 2017 - ASBMB
In Escherichia coli, the peptidoglycan cell wall is synthesized by bifunctional penicillin-
binding proteins such as PBP1b that have both transpeptidase and transglycosylase …
binding proteins such as PBP1b that have both transpeptidase and transglycosylase …
Thermodynamics of protein–ligand interactions as a reference for computational analysis: how to assess accuracy, reliability and relevance of experimental data
SG Krimmer, G Klebe - Journal of computer-aided molecular design, 2015 - Springer
For a conscientious interpretation of thermodynamic parameters (Gibbs free energy,
enthalpy and entropy) obtained by isothermal titration calorimetry (ITC), it is necessary to first …
enthalpy and entropy) obtained by isothermal titration calorimetry (ITC), it is necessary to first …