Promoter bivalency favors an open chromatin architecture in embryonic stem cells
In embryonic stem cells (ESCs), developmental gene promoters are characterized by their
bivalent chromatin state, with simultaneous modification by MLL2 and Polycomb complexes …
bivalent chromatin state, with simultaneous modification by MLL2 and Polycomb complexes …
The role of Xist‐mediated Polycomb recruitment in the initiation of X‐chromosome inactivation
A Bousard, AC Raposo, JJ Żylicz, C Picard, VB Pires… - EMBO …, 2019 - embopress.org
Xist RNA has been established as the master regulator of X‐chromosome inactivation (XCI)
in female eutherian mammals, but its mechanism of action remains unclear. By creating …
in female eutherian mammals, but its mechanism of action remains unclear. By creating …
[HTML][HTML] Using R and bioconductor in clinical genomics and transcriptomics
JL Sepulveda - The Journal of Molecular Diagnostics, 2020 - Elsevier
Bioinformatics pipelines are essential in the analysis of genomic and transcriptomic data
generated by next-generation sequencing (NGS). Recent guidelines emphasize the need …
generated by next-generation sequencing (NGS). Recent guidelines emphasize the need …
A Novel Angiotensin II–Induced Long Noncoding RNA Giver Regulates Oxidative Stress, Inflammation, and Proliferation in Vascular Smooth Muscle Cells
Rationale: AngII (angiotensin II)-mediated vascular smooth muscle cell (VSMC) dysfunction
plays a major role in hypertension. Long noncoding RNAs have elicited much interest, but …
plays a major role in hypertension. Long noncoding RNAs have elicited much interest, but …
Toward the human cellular microRNAome
MicroRNAs are short RNAs that serve as regulators of gene expression and are essential
components of normal development as well as modulators of disease. MicroRNAs generally …
components of normal development as well as modulators of disease. MicroRNAs generally …
APPRIS 2017: principal isoforms for multiple gene sets
JM Rodriguez, J Rodriguez-Rivas… - Nucleic acids …, 2018 - academic.oup.com
Abstract The APPRIS database (http://appris-tools. org) uses protein structural and functional
features and information from cross-species conservation to annotate splice isoforms in …
features and information from cross-species conservation to annotate splice isoforms in …
Paths and timings of the peopling of Polynesia inferred from genomic networks
Polynesia was settled in a series of extraordinary voyages across an ocean spanning one
third of the Earth, but the sequences of islands settled remain unknown and their timings …
third of the Earth, but the sequences of islands settled remain unknown and their timings …
Whole-genome sequencing reveals that variants in the interleukin 18 receptor accessory protein 3′ UTR protect against ALS
The noncoding genome is substantially larger than the protein-coding genome but has been
largely unexplored by genetic association studies. Here, we performed region-based rare …
largely unexplored by genetic association studies. Here, we performed region-based rare …
Insights into variation in meiosis from 31,228 human sperm genomes
AD Bell, CJ Mello, J Nemesh, SA Brumbaugh… - Nature, 2020 - nature.com
Meiosis, although essential for reproduction, is also variable and error-prone: rates of
chromosome crossover vary among gametes, between the sexes, and among humans of the …
chromosome crossover vary among gametes, between the sexes, and among humans of the …
[HTML][HTML] Widespread influence of 3′-end structures on mammalian mRNA processing and stability
The physiological relevance of structures within mammalian mRNAs has been elusive, as
these mRNAs are less folded in cells than in vitro and have predicted secondary structures …
these mRNAs are less folded in cells than in vitro and have predicted secondary structures …