Plant-derived active compounds as a potential nucleocapsid protein inhibitor of SARS-CoV-2: an in-silico study

D Kashyap, R Roy, P Kar, HC Jha - Journal of Biomolecular …, 2023 - Taylor & Francis
Abstract The coronavirus disease 2019 (COVID-19) is caused by SARS-CoV-2. This virus
has a high mismatch repair proofreading ability due to its unique exonuclease activity …

GaudiMM: A modular multi‐objective platform for molecular modeling

J Rodríguez‐Guerra Pedregal, G Sciortino, J Guasp… - 2017 - Wiley Online Library
GaudiMM (for Genetic Algorithms with Unrestricted Descriptors for Intuitive Molecular
Modeling) is here presented as a modular platform for rapid 3D sketching of molecular …

Scoring functions for prediction of protein-ligand interactions

JC Wang, JH Lin - Current pharmaceutical design, 2013 - ingentaconnect.com
The scoring functions for protein-ligand interactions plays central roles in computational
drug design, virtual screening of chemical libraries for new lead identification, and prediction …

Archiving and disseminating integrative structure models

B Vallat, B Webb, J Westbrook, A Sali… - Journal of biomolecular …, 2019 - Springer
Limitations in the applicability, accuracy, and precision of individual structure
characterization methods can sometimes be overcome via an integrative modeling …

Screening of new antileukemic agents from essential oils of algae extracts and computational modeling of their interactions with intracellular signaling nodes

B Atasever-Arslan, K Yilancioglu, Z Kalkan… - European Journal of …, 2016 - Elsevier
Microalgae are very rich in bioactive compounds, minerals, polysaccharides, poly-
unsaturated fatty acids and vitamins, and these rich constituents make microalgae an …

Computer‐Guided Trypanocidal Activity of Natural Lactones Produced by Endophytic Fungus of Euphorbia umbellata

AS Gusmao, LS Abreu, JF Tavares… - Chemistry & …, 2021 - Wiley Online Library
Hundreds of millions of people worldwide are affected by Chagas' disease caused by
Trypanosoma cruzi. Since the current treatment lack efficacy, specificity, and suffers from …

Symmetry principles in optimization problems: an application to protein stability prediction

F Pucci, K Bernaerts, F Teheux, D Gilis, M Rooman - IFAC-PapersOnLine, 2015 - Elsevier
In this paper, we show how the adequate use of the intrinsic symmetry of a system when
setting up its model structure can avoid unwanted biases in the parameter optimization …

Metagenomics reveals the high polycyclic aromatic hydrocarbon‐degradation potential of abundant uncultured bacteria from chronically polluted subantarctic and …

CL Loviso, M Lozada, LM Guibert… - Journal of Applied …, 2015 - academic.oup.com
Aims To investigate the potential to degrade polycyclic aromatic hydrocarbons (PAHs) of yet‐
to‐be‐cultured bacterial populations from chronically polluted intertidal sediments. Methods …

7-Hydroxy Frullanolide, a sesquiterpene lactone, increases intracellular calcium amounts, lowers CD4+ T cell and macrophage responses, and ameliorates DSS …

S Pathak, A Gokhroo, AK Dubey, S Majumdar… - International …, 2021 - Elsevier
Sesquiterpene lactones are a class of anti-inflammatory molecules obtained from plants
belonging to the Asteraceae family. In this study, the effects of 7-hydroxy frullanolide (7HF), a …

Detailed Analyses of Molecular Interactions between Favipiravir and RNA Viruses In Silico

T Shirai, M Sada, T Saraya, D Kurai, S Sunagawa… - Viruses, 2022 - mdpi.com
There are currently no antiviral agents for human metapneumovirus (HMPV), respiratory
syncytial virus (RSV), mumps virus (MuV), or measles virus (MeV). Favipiravir has been …