[HTML][HTML] Identification of FDA-approved drugs with triple targeting mode of action for the treatment of monkeypox: a high throughput virtual screening study

V Srivastava, B Naik, P Godara, D Das… - Molecular Diversity, 2023 - Springer
According to the Center for Disease Control and Prevention, as of August 23, 94 countries
had confirmed 42,954 Monkeypox Virus cases. As specific monkeypox drugs are not yet …

Assessment of different parameters on the accuracy of computational alanine scanning of protein–protein complexes with the molecular mechanics/generalized born …

ME Valdés-Tresanco… - The Journal of …, 2023 - ACS Publications
Computational alanine scanning with the molecular mechanics generalized Born surface
area (MM/GBSA) method constitutes a widely used approach for identifying critical residues …

Determination of molecule category of ligands targeting the ligand-binding pocket of nuclear receptors with structural elucidation and machine learning

Q Wang, Z Wang, S Tian, L Wang, R Tang… - Journal of Chemical …, 2022 - ACS Publications
The mechanism of transcriptional activation/repression of the nuclear receptors (NRs)
involves two main conformations of the NR protein, namely, the active (agonistic) and …

[HTML][HTML] Synthesis of Pyrrolo[3,4-b]pyridin-5-ones via Ugi–Zhu Reaction and In Vitro–In Silico Studies against Breast Carcinoma

I Morales-Salazar, CE Garduño-Albino… - Pharmaceuticals, 2023 - mdpi.com
An Ugi–Zhu three-component reaction (UZ-3CR) coupled in a one-pot manner to a cascade
process (N-acylation/aza Diels–Alder cycloaddition/decarboxylation/dehydration) was …

[HTML][HTML] Evaluating the ability of end-point methods to predict the binding affinity tendency of protein kinase inhibitors

M Bello, C Bandala - RSC advances, 2023 - pubs.rsc.org
Because of the high economic cost of exploring the experimental impact of mutations
occurring in kinase proteins, computational approaches have been employed as alternative …

Deciphering the Shared and Specific Drug Resistance Mechanisms of Anaplastic Lymphoma Kinase via Binding Free Energy Computation

Y Yu, Z Wang, L Wang, Q Wang, R Tang, S Xiang… - Research, 2023 - spj.science.org
Anaplastic lymphoma kinase (ALK), a tyrosine receptor kinase, has been proven to be
associated with the occurrence of numerous malignancies. Although there have been …

Cooperation of structural motifs controls drug selectivity in cyclin-dependent kinases: an advanced theoretical analysis

L Wang, L Xu, Z Wang, T Hou, H Hao… - Briefings in …, 2023 - academic.oup.com
Understanding drug selectivity mechanism is a long-standing issue for helping design drugs
with high specificity. Designing drugs targeting cyclin-dependent kinases (CDKs) with high …

[HTML][HTML] Structural insights into neonicotinoids and N-unsubstituted metabolites on human NAChRs by molecular docking, dynamics simulations, and calcium imaging

K Grillberger, E Cöllen, CI Trivisani, J Blum… - International Journal of …, 2023 - mdpi.com
Neonicotinoid pesticides were initially designed in order to achieve species selectivity on
insect nicotinic acetylcholine receptors (nAChRs). However, concerns arose when agonistic …

Uncovering the Kinetic Characteristics and Degradation Preference of PROTAC Systems with Advanced Theoretical Analyses

R Tang, Z Wang, S Xiang, L Wang, Y Yu, Q Wang… - JACS Au, 2023 - ACS Publications
Proteolysis-targeting chimeras (PROTACs), which can selectively induce the degradation of
target proteins, represent an attractive technology in drug discovery. A large number of …

Exhaustively Exploring the Prevalent Interaction Pathways of Ligands Targeting the Ligand-Binding Pocket of Farnesoid X Receptor via Combined Enhanced …

S Xiang, Z Wang, R Tang, L Wang… - Journal of Chemical …, 2023 - ACS Publications
It is well-known that the potency of a drug is heavily associated with its kinetic and
thermodynamic properties with the target. Nuclear receptors (NRs), as an important target …