Integrated molecular modeling and machine learning for drug design
Modern therapeutic development often involves several stages that are interconnected, and
multiple iterations are usually required to bring a new drug to the market. Computational …
multiple iterations are usually required to bring a new drug to the market. Computational …
Boosting protein–ligand binding pose prediction and virtual screening based on residue–atom distance likelihood potential and graph transformer
The past few years have witnessed enormous progress toward applying machine learning
approaches to the development of protein–ligand scoring functions. However, the robust …
approaches to the development of protein–ligand scoring functions. However, the robust …
Application of variational graph encoders as an effective generalist algorithm in computer-aided drug design
Although there has been considerable progress in molecular property prediction in
computer-aided drug design, there is a critical need to have fast and accurate models. Many …
computer-aided drug design, there is a critical need to have fast and accurate models. Many …
Geometric interaction graph neural network for predicting protein–ligand binding affinities from 3d structures (gign)
Predicting protein–ligand binding affinities (PLAs) is a core problem in drug discovery.
Recent advances have shown great potential in applying machine learning (ML) for PLA …
Recent advances have shown great potential in applying machine learning (ML) for PLA …
Interplay of phytohormones and epigenetic regulation: A recipe for plant development and plasticity
K Jiang, H Guo, J Zhai - Journal of Integrative Plant Biology, 2023 - Wiley Online Library
Both phytohormone signaling and epigenetic mechanisms have long been known to play
crucial roles in plant development and plasticity in response to ambient stimuli. Indeed …
crucial roles in plant development and plasticity in response to ambient stimuli. Indeed …
A generalized protein–ligand scoring framework with balanced scoring, docking, ranking and screening powers
Applying machine learning algorithms to protein–ligand scoring functions has aroused
widespread attention in recent years due to the high predictive accuracy and affordable …
widespread attention in recent years due to the high predictive accuracy and affordable …
Multiscale topology-enabled structure-to-sequence transformer for protein–ligand interaction predictions
Despite the success of pretrained natural language processing (NLP) models in various
fields, their application in computational biology has been hindered by their reliance on …
fields, their application in computational biology has been hindered by their reliance on …
Hac-net: A hybrid attention-based convolutional neural network for highly accurate protein–ligand binding affinity prediction
GW Kyro, RI Brent, VS Batista - Journal of Chemical Information …, 2023 - ACS Publications
Applying deep learning concepts from image detection and graph theory has greatly
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …
advanced protein–ligand binding affinity prediction, a challenge with enormous ramifications …
A fully differentiable ligand pose optimization framework guided by deep learning and a traditional scoring function
The recently reported machine learning-or deep learning-based scoring functions (SFs)
have shown exciting performance in predicting protein–ligand binding affinities with fruitful …
have shown exciting performance in predicting protein–ligand binding affinities with fruitful …
Conserved sites and recognition mechanisms of T1R1 and T2R14 receptors revealed by ensemble docking and molecular descriptors and fingerprints combined with …
Z Cui, N Zhang, T Zhou, X Zhou, H Meng… - Journal of Agricultural …, 2023 - ACS Publications
Taste peptides, as an important component of protein-rich foodstuffs, potentiate the nutrition
and taste of food. Thereinto, umami-and bitter-taste peptides have been ex tensively …
and taste of food. Thereinto, umami-and bitter-taste peptides have been ex tensively …