Here, we present MultiProt, a fully automated highly efficient technique to detect multiple
structural alignments of protein structures. MultiProt finds the common geometrical cores …

We present a fully automated highly efficient technique which detects the multiple structural
alignments of protein structures. Our method, MultiProt, finds the common geometrical cores …

We present a novel algorithm named FAST for aligning protein three‐dimensional
structures. FAST uses a directionality‐based scoring scheme to compare the intra‐molecular …

Motivation: Existing comparisons of protein structures are not able to describe structural
divergence and flexibility in the structures being compared because they focus on identifying …

With a rapidly growing pool of known tertiary structures, the importance of protein structure
comparison parallels that of sequence alignment. We have developed a novel algorithm …

A method was developed to compare protein structures and to combine them into a multiple
structure consensus. Previous methods of multiple structure comparison have only …

An algorithm is presented for the accurate and rapid generation of multiple protein sequence
alignments from tertiary structure comparisons. A preliminary multiple sequence alignment is …

We present a novel method for multiple alignment of protein structures and detection of
structural motifs. To date, only a few methods are available for addressing this task. Most of …

Publisher Summary This chapter demonstrates the use of alignments obtained from
comparison of the protein three-dimensional structures as a standard against which to test …

A major bottleneck in comparative modeling is the alignment quality; this is especially true
for proteins whose distant relationships could be reliably recognized only by recent …