[HTML][HTML] Empirical scoring functions for structure-based virtual screening: applications, critical aspects, and challenges

IA Guedes, FSS Pereira, LE Dardenne - Frontiers in pharmacology, 2018 - frontiersin.org
Structure-based virtual screening (VS) is a widely used approach that employs the
knowledge of the three-dimensional structure of the target of interest in the design of new …

[HTML][HTML] Structure-based virtual screening for drug discovery: a problem-centric review

T Cheng, Q Li, Z Zhou, Y Wang, SH Bryant - The AAPS journal, 2012 - Springer
Abstract Structure-based virtual screening (SBVS) has been widely applied in early-stage
drug discovery. From a problem-centric perspective, we reviewed the recent advances and …

Selecting machine-learning scoring functions for structure-based virtual screening

PJ Ballester - Drug discovery today: technologies, 2019 - Elsevier
Interest in docking technologies has grown parallel to the ever increasing number and
diversity of 3D models for macromolecular therapeutic targets. Structure-Based Virtual …

Towards improving compound selection in structure-based virtual screening

B Waszkowycz - Drug discovery today, 2008 - Elsevier
Structure-based virtual screening is now an established technology for supporting hit finding
and lead optimisation in drug discovery. Recent validation studies have highlighted the poor …

Improving structure-based virtual screening with ensemble docking and machine learning

J Ricci-Lopez, SA Aguila, MK Gilson… - Journal of chemical …, 2021 - ACS Publications
One of the main challenges of structure-based virtual screening (SBVS) is the incorporation
of the receptor's flexibility, as its explicit representation in every docking run implies a high …

The compromise of virtual screening and its impact on drug discovery

O Slater, M Kontoyianni - Expert opinion on drug discovery, 2019 - Taylor & Francis
Introduction: Docking and structure-based virtual screening (VS) have been standard
approaches in structure-based design for over two decades. However, our understanding of …

Machine‐learning scoring functions for structure‐based virtual screening

H Li, KH Sze, G Lu, PJ Ballester - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Molecular docking predicts whether and how small molecules bind to a macromolecular
target using a suitable 3D structure. Scoring functions for structure‐based virtual screening …

Ligand-based structural hypotheses for virtual screening

AN Jain - Journal of medicinal chemistry, 2004 - ACS Publications
The majority of drug targets for small molecule therapeutics are proteins whose three-
dimensional structure is not known to sufficient resolution to permit structure-based design …

Docking-based virtual screening: recent developments

T Tuccinardi - Combinatorial chemistry & high throughput …, 2009 - ingentaconnect.com
Virtual (database) screening (VS) of molecules promises to accelerate the discovery of new
drugs and reduce costs by identifying molecules with high probabilities of binding to a target …

[HTML][HTML] Accelerating high-throughput virtual screening through molecular pool-based active learning

DE Graff, EI Shakhnovich, CW Coley - Chemical science, 2021 - pubs.rsc.org
Structure-based virtual screening is an important tool in early stage drug discovery that
scores the interactions between a target protein and candidate ligands. As virtual libraries …