[HTML][HTML] Empirical scoring functions for structure-based virtual screening: applications, critical aspects, and challenges
IA Guedes, FSS Pereira, LE Dardenne - Frontiers in pharmacology, 2018 - frontiersin.org
Structure-based virtual screening (VS) is a widely used approach that employs the
knowledge of the three-dimensional structure of the target of interest in the design of new …
knowledge of the three-dimensional structure of the target of interest in the design of new …
[HTML][HTML] Structure-based virtual screening for drug discovery: a problem-centric review
Abstract Structure-based virtual screening (SBVS) has been widely applied in early-stage
drug discovery. From a problem-centric perspective, we reviewed the recent advances and …
drug discovery. From a problem-centric perspective, we reviewed the recent advances and …
Selecting machine-learning scoring functions for structure-based virtual screening
PJ Ballester - Drug discovery today: technologies, 2019 - Elsevier
Interest in docking technologies has grown parallel to the ever increasing number and
diversity of 3D models for macromolecular therapeutic targets. Structure-Based Virtual …
diversity of 3D models for macromolecular therapeutic targets. Structure-Based Virtual …
Towards improving compound selection in structure-based virtual screening
B Waszkowycz - Drug discovery today, 2008 - Elsevier
Structure-based virtual screening is now an established technology for supporting hit finding
and lead optimisation in drug discovery. Recent validation studies have highlighted the poor …
and lead optimisation in drug discovery. Recent validation studies have highlighted the poor …
Improving structure-based virtual screening with ensemble docking and machine learning
One of the main challenges of structure-based virtual screening (SBVS) is the incorporation
of the receptor's flexibility, as its explicit representation in every docking run implies a high …
of the receptor's flexibility, as its explicit representation in every docking run implies a high …
The compromise of virtual screening and its impact on drug discovery
O Slater, M Kontoyianni - Expert opinion on drug discovery, 2019 - Taylor & Francis
Introduction: Docking and structure-based virtual screening (VS) have been standard
approaches in structure-based design for over two decades. However, our understanding of …
approaches in structure-based design for over two decades. However, our understanding of …
Machine‐learning scoring functions for structure‐based virtual screening
Molecular docking predicts whether and how small molecules bind to a macromolecular
target using a suitable 3D structure. Scoring functions for structure‐based virtual screening …
target using a suitable 3D structure. Scoring functions for structure‐based virtual screening …
Ligand-based structural hypotheses for virtual screening
AN Jain - Journal of medicinal chemistry, 2004 - ACS Publications
The majority of drug targets for small molecule therapeutics are proteins whose three-
dimensional structure is not known to sufficient resolution to permit structure-based design …
dimensional structure is not known to sufficient resolution to permit structure-based design …
Docking-based virtual screening: recent developments
T Tuccinardi - Combinatorial chemistry & high throughput …, 2009 - ingentaconnect.com
Virtual (database) screening (VS) of molecules promises to accelerate the discovery of new
drugs and reduce costs by identifying molecules with high probabilities of binding to a target …
drugs and reduce costs by identifying molecules with high probabilities of binding to a target …
[HTML][HTML] Accelerating high-throughput virtual screening through molecular pool-based active learning
Structure-based virtual screening is an important tool in early stage drug discovery that
scores the interactions between a target protein and candidate ligands. As virtual libraries …
scores the interactions between a target protein and candidate ligands. As virtual libraries …
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