Three-dimensional convolutional neural networks and a cross-docked data set for structure-based drug design
PG Francoeur, T Masuda, J Sunseri, A Jia… - Journal of chemical …, 2020 - ACS Publications
One of the main challenges in drug discovery is predicting protein–ligand binding affinity.
Recently, machine learning approaches have made substantial progress on this task …
Recently, machine learning approaches have made substantial progress on this task …
Improved protein–ligand binding affinity prediction with structure-based deep fusion inference
Predicting accurate protein–ligand binding affinities is an important task in drug discovery
but remains a challenge even with computationally expensive biophysics-based energy …
but remains a challenge even with computationally expensive biophysics-based energy …
Fabind: Fast and accurate protein-ligand binding
Modeling the interaction between proteins and ligands and accurately predicting their
binding structures is a critical yet challenging task in drug discovery. Recent advancements …
binding structures is a critical yet challenging task in drug discovery. Recent advancements …
KDEEP: Protein–Ligand Absolute Binding Affinity Prediction via 3D-Convolutional Neural Networks
Accurately predicting protein–ligand binding affinities is an important problem in
computational chemistry since it can substantially accelerate drug discovery for virtual …
computational chemistry since it can substantially accelerate drug discovery for virtual …
Protein–ligand scoring with convolutional neural networks
Computational approaches to drug discovery can reduce the time and cost associated with
experimental assays and enable the screening of novel chemotypes. Structure-based drug …
experimental assays and enable the screening of novel chemotypes. Structure-based drug …
Deep learning in drug design: protein-ligand binding affinity prediction
Computational drug design relies on the calculation of binding strength between two
biological counterparts especially a chemical compound, ie, a ligand, and a protein …
biological counterparts especially a chemical compound, ie, a ligand, and a protein …
From proteins to ligands: decoding deep learning methods for binding affinity prediction
Accurate in silico prediction of protein–ligand binding affinity is important in the early stages
of drug discovery. Deep learning-based methods exist but have yet to overtake more …
of drug discovery. Deep learning-based methods exist but have yet to overtake more …
Combining docking pose rank and structure with deep learning improves protein–ligand binding mode prediction over a baseline docking approach
We present a simple, modular graph-based convolutional neural network that takes
structural information from protein–ligand complexes as input to generate models for activity …
structural information from protein–ligand complexes as input to generate models for activity …
Tankbind: Trigonometry-aware neural networks for drug-protein binding structure prediction
Illuminating interactions between proteins and small drug molecules is a long-standing
challenge in the field of drug discovery. Despite the importance of understanding these …
challenge in the field of drug discovery. Despite the importance of understanding these …
Predicting protein–ligand docking structure with graph neural network
Modern day drug discovery is extremely expensive and time consuming. Although
computational approaches help accelerate and decrease the cost of drug discovery, existing …
computational approaches help accelerate and decrease the cost of drug discovery, existing …