RMBase v2. 0: deciphering the map of RNA modifications from epitranscriptome sequencing data
More than 100 distinct chemical modifications to RNA have been characterized so far.
However, the prevalence, mechanisms and functions of various RNA modifications remain …
However, the prevalence, mechanisms and functions of various RNA modifications remain …
RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data
Although more than 100 different types of RNA modifications have been characterized
across all living organisms, surprisingly little is known about the modified positions and their …
across all living organisms, surprisingly little is known about the modified positions and their …
RMBase v3. 0: decode the landscape, mechanisms and functions of RNA modifications
J Xuan, L Chen, Z Chen, J Pang, J Huang… - Nucleic Acids …, 2024 - academic.oup.com
Although over 170 chemical modifications have been identified, their prevalence,
mechanism and function remain largely unknown. To enable integrated analysis of diverse …
mechanism and function remain largely unknown. To enable integrated analysis of diverse …
[HTML][HTML] Epitranscriptome: review of top 25 most-studied RNA modifications
VA Arzumanian, GV Dolgalev, IY Kurbatov… - International Journal of …, 2022 - mdpi.com
The alphabet of building blocks for RNA molecules is much larger than the standard four
nucleotides. The diversity is achieved by the post-transcriptional biochemical modification of …
nucleotides. The diversity is achieved by the post-transcriptional biochemical modification of …
RNAmod: an integrated system for the annotation of mRNA modifications
Q Liu, RI Gregory - Nucleic acids research, 2019 - academic.oup.com
Dynamic and reversible RNA modifications such as N 6-methyladenosine (m6A) can play
important roles in regulating messenger RNA (mRNA) splicing, export, stability and …
important roles in regulating messenger RNA (mRNA) splicing, export, stability and …
Guitar: an R/bioconductor package for gene annotation guided transcriptomic analysis of RNA‐related genomic features
Biological features, such as genes and transcription factor binding sites, are often denoted
with genome‐based coordinates as the genomic features. While genome‐based …
with genome‐based coordinates as the genomic features. While genome‐based …
RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis
Deciphering the biological impacts of millions of single nucleotide variants remains a major
challenge. Recent studies suggest that RNA modifications play versatile roles in essential …
challenge. Recent studies suggest that RNA modifications play versatile roles in essential …
DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology
With advanced technologies to map RNA modifications, our understanding of them has
been revolutionized, and they are seen to be far more widespread and important than …
been revolutionized, and they are seen to be far more widespread and important than …
[HTML][HTML] The epitranscriptome toolbox
S Moshitch-Moshkovitz, D Dominissini, G Rechavi - Cell, 2022 - cell.com
In the last decade, the notion that mRNA modifications are involved in regulation of gene
expression was demonstrated in thousands of studies. To date, new technologies and …
expression was demonstrated in thousands of studies. To date, new technologies and …
[HTML][HTML] Analysis of RNA modifications by second-and third-generation deep sequencing: 2020 update
Y Motorin, V Marchand - Genes, 2021 - mdpi.com
The precise mapping and quantification of the numerous RNA modifications that are present
in tRNAs, rRNAs, ncRNAs/miRNAs, and mRNAs remain a major challenge and a top priority …
in tRNAs, rRNAs, ncRNAs/miRNAs, and mRNAs remain a major challenge and a top priority …