[HTML][HTML] An advanced systems biology framework of feature engineering for cold tolerance genes discovery from integrated omics and non-omics data in soybean

PH Kao, S Baiya, ZY Lai, CM Huang, LH Jhan… - Frontiers in Plant …, 2022 - frontiersin.org
Soybean is sensitive to low temperatures during the crop growing season. An urgent
demand for breeding cold-tolerant cultivars to alleviate the production loss is apparent to …

Deciphering the myth of cold tolerance in soybean: An overview of molecular breeding applications

J Wei, Q QIANG, G YIJUN, R QIUYAN… - Notulae Botanicae …, 2023 - notulaebotanicae.ro
The soybean is a source of several dietary components, including milk, protein, and oil. Cold
stress has significantly curtailed soybean growth and yield in large areas and caused a high …

Comparative transcriptome-based mining and expression profiling of transcription factors related to cold tolerance in peanut

C Jiang, H Zhang, J Ren, J Dong, X Zhao… - International journal of …, 2020 - mdpi.com
Plants tolerate cold stress by regulating gene networks controlling cellular and physiological
traits to modify growth and development. Transcription factor (TF)-directed regulation of …

Comparative analysis of physiological variations and genetic architecture for cold stress response in soybean germplasm

MA Hussain, S Li, H Gao, C Feng, P Sun… - Frontiers in Plant …, 2023 - frontiersin.org
Soybean (Glycine max L.) is susceptible to low temperatures. Increasing lines of evidence
indicate that abiotic stress-responsive genes are involved in plant low-temperature stress …

Identification and functional verification of cold tolerance genes in spring maize seedlings based on a genome-wide association study and quantitative trait locus …

Y Jin, Z Zhang, Y Xi, Z Yang, Z Xiao, S Guan… - Frontiers in Plant …, 2021 - frontiersin.org
Maize (Zea mays L.) is a tropical crop, and low temperature has become one of the main
abiotic stresses for maize growth and development, affecting many maize growth processes …

Hub gene mining and co-expression network construction of low-temperature response in maize of seedling by WGCNA

T Yu, J Zhang, J Cao, X Ma, W Li, G Yang - Genes, 2023 - mdpi.com
Weighted gene co-expression network analysis (WGCNA) is a research method in
systematic biology. It is widely used to identify gene modules related to target traits in multi …

Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance

C Chai, Y Wang, T Joshi, B Valliyodan, S Prince… - BMC genomics, 2015 - Springer
Background Whole genome sequencing provides the most comprehensive collection of an
organism's genetic information. The availability of complete genome sequences is expected …

Transcriptome Profiling of Maize (Zea mays L.) Leaves Reveals Key Cold-Responsive Genes, Transcription Factors, and Metabolic Pathways Regulating Cold Stress …

JK Waititu, Q Cai, Y Sun, Y Sun, C Li, C Zhang, J Liu… - Genes, 2021 - mdpi.com
Cold tolerance is a complex trait that requires a critical perspective to understand its
underpinning mechanism. To unravel the molecular framework underlying maize (Zea mays …

Identifying conserved genes involved in crop tolerance to cold stress

S Yousefi, A Marchese, SA Salami, J Benny… - Functional Plant …, 2022 - CSIRO Publishing
Low temperature is a limiting factor for crop productivity in tropical and subtropical climates.
Cold stress response in plants involves perceiving and relaying the signal through a …

Transcriptome sequencing identified genes and gene ontologies associated with early freezing tolerance in maize

Z Li, G Hu, X Liu, Y Zhou, Y Li, X Zhang… - Frontiers in Plant …, 2016 - frontiersin.org
Originating in a tropical climate, maize has faced great challenges as cultivation has
expanded to the majority of the world's temperate zones. In these zones, frost and cold …