E3bind: An end-to-end equivariant network for protein-ligand docking
In silico prediction of the ligand binding pose to a given protein target is a crucial but
challenging task in drug discovery. This work focuses on blind flexible selfdocking, where …
challenging task in drug discovery. This work focuses on blind flexible selfdocking, where …
Fabind: Fast and accurate protein-ligand binding
Modeling the interaction between proteins and ligands and accurately predicting their
binding structures is a critical yet challenging task in drug discovery. Recent advancements …
binding structures is a critical yet challenging task in drug discovery. Recent advancements …
GAABind: a geometry-aware attention-based network for accurate protein–ligand binding pose and binding affinity prediction
H Tan, Z Wang, G Hu - Briefings in Bioinformatics, 2024 - academic.oup.com
Protein–ligand interactions are increasingly profiled at high-throughput, playing a vital role
in lead compound discovery and drug optimization. Accurate prediction of binding pose and …
in lead compound discovery and drug optimization. Accurate prediction of binding pose and …
Equivariant flexible modeling of the protein–ligand binding pose with geometric deep learning
Flexible modeling of the protein–ligand complex structure is a fundamental challenge for in
silico drug development. Recent studies have improved commonly used docking tools by …
silico drug development. Recent studies have improved commonly used docking tools by …
Guiding conventional protein–ligand docking software with convolutional neural networks
The high-performance computational techniques have brought significant benefits for drug
discovery efforts in recent decades. One of the most challenging problems in drug discovery …
discovery efforts in recent decades. One of the most challenging problems in drug discovery …
Equipocket: an e (3)-equivariant geometric graph neural network for ligand binding site prediction
Predicting the binding sites of the target proteins plays a fundamental role in drug discovery.
Most existing deep-learning methods consider a protein as a 3D image by spatially …
Most existing deep-learning methods consider a protein as a 3D image by spatially …
Diffdock: Diffusion steps, twists, and turns for molecular docking
Predicting the binding structure of a small molecule ligand to a protein--a task known as
molecular docking--is critical to drug design. Recent deep learning methods that treat …
molecular docking--is critical to drug design. Recent deep learning methods that treat …
CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training
The expertise accumulated in deep neural network-based structure prediction has been
widely transferred to the field of protein–ligand binding pose prediction, thus leading to the …
widely transferred to the field of protein–ligand binding pose prediction, thus leading to the …
Deep learning model for flexible and efficient protein-ligand docking
M Masters, AH Mahmoud, Y Wei… - … Machine Learning for Drug …, 2022 - openreview.net
Protein-ligand docking is an essential tool in structure-based drug design with applications
ranging from virtual high-throughput screening to pose prediction for lead optimization. Most …
ranging from virtual high-throughput screening to pose prediction for lead optimization. Most …
Deep scoring neural network replacing the scoring function components to improve the performance of structure-based molecular docking
L Yang, G Yang, X Chen, Q Yang, X Yao… - ACS chemical …, 2021 - ACS Publications
Accurate prediction of protein–ligand interactions can greatly promote drug development.
Recently, a number of deep-learning-based methods have been proposed to predict protein …
Recently, a number of deep-learning-based methods have been proposed to predict protein …