VIPERdb2: an enhanced and web API enabled relational database for structural virology

M Carrillo-Tripp, CM Shepherd, IA Borelli… - Nucleic acids …, 2009 - academic.oup.com
Abstract VIPERdb (http://viperdb. scripps. edu) is a relational database and a web portal for
icosahedral virus capsid structures. Our aim is to provide a comprehensive resource specific …

VIPERdb: a relational database for structural virology

CM Shepherd, IA Borelli, G Lander… - Nucleic acids …, 2006 - academic.oup.com
Abstract VIPERdb (http://viperdb. scripps. edu) is a database for icosahedral virus capsid
structures. Our aim is to provide a comprehensive resource specific to the needs of the …

VIPERdb v3. 0: a structure-based data analytics platform for viral capsids

D Montiel-Garcia, N Santoyo-Rivera, P Ho… - Nucleic Acids …, 2021 - academic.oup.com
Abstract VIrus Particle ExploreR data base (VIPERdb)(http://viperdb. scripps. edu) is a
curated repository of virus capsid structures and a database of structure-derived data along …

[HTML][HTML] Virus Particle Explorer (VIPER), a website for virus capsid structures and their computational analyses

VS Reddy, P Natarajan, B Okerberg, K Li… - Journal of …, 2001 - Am Soc Microbiol
The number of icosahedral-capsid structures determined at a near-atomic level of resolution
is growing rapidly as advances in synchrotron radiation sources, fast-readout detectors, and …

[HTML][HTML] Structural puzzles in virology solved with an overarching icosahedral design principle

R Twarock, A Luque - Nature communications, 2019 - nature.com
Viruses have evolved protein containers with a wide spectrum of icosahedral architectures
to protect their genetic material. The geometric constraints defining these container designs …

Unraveling the web of viroinformatics: computational tools and databases in virus research

D Sharma, P Priyadarshini, S Vrati - Journal of virology, 2015 - Am Soc Microbiol
The beginning of the second century of research in the field of virology (the first virus was
discovered in 1898) was marked by its amalgamation with bioinformatics, resulting in the …

ViPR: an open bioinformatics database and analysis resource for virology research

BE Pickett, EL Sadat, Y Zhang, JM Noronha… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Virus Pathogen Database and Analysis Resource (ViPR, www. ViPRbrc. org) is
an integrated repository of data and analysis tools for multiple virus families, supported by …

Structure unifies the viral universe

NGA Abrescia, DH Bamford, JM Grimes… - Annual review of …, 2012 - annualreviews.org
Is it possible to meaningfully comprehend the diversity of the viral world? We propose that it
is. This is based on the observation that, although there is immense genomic variation, every …

ViralZone: a knowledge resource to understand virus diversity

C Hulo, E De Castro, P Masson… - Nucleic acids …, 2011 - academic.oup.com
The molecular diversity of viruses complicates the interpretation of viral genomic and
proteomic data. To make sense of viral gene functions, investigators must be familiar with …

ViPTree: the viral proteomic tree server

Y Nishimura, T Yoshida, M Kuronishi, H Uehara… - …, 2017 - academic.oup.com
ViPTree is a web server provided through GenomeNet to generate viral proteomic trees for
classification of viruses based on genome-wide similarities. Users can upload viral genomes …