Self-supervised graph transformer on large-scale molecular data
How to obtain informative representations of molecules is a crucial prerequisite in AI-driven
drug design and discovery. Recent researches abstract molecules as graphs and employ …
drug design and discovery. Recent researches abstract molecules as graphs and employ …
An effective self-supervised framework for learning expressive molecular global representations to drug discovery
How to produce expressive molecular representations is a fundamental challenge in
artificial intelligence-driven drug discovery. Graph neural network (GNN) has emerged as a …
artificial intelligence-driven drug discovery. Graph neural network (GNN) has emerged as a …
Learning attributed graph representations with communicative message passing transformer
Constructing appropriate representations of molecules lies at the core of numerous tasks
such as material science, chemistry and drug designs. Recent researches abstract …
such as material science, chemistry and drug designs. Recent researches abstract …
Hierarchical molecular graph self-supervised learning for property prediction
Molecular graph representation learning has shown considerable strength in molecular
analysis and drug discovery. Due to the difficulty of obtaining molecular property labels, pre …
analysis and drug discovery. Due to the difficulty of obtaining molecular property labels, pre …
Molecular contrastive learning of representations via graph neural networks
Molecular machine learning bears promise for efficient molecular property prediction and
drug discovery. However, labelled molecule data can be expensive and time consuming to …
drug discovery. However, labelled molecule data can be expensive and time consuming to …
Path-augmented graph transformer network
Much of the recent work on learning molecular representations has been based on Graph
Convolution Networks (GCN). These models rely on local aggregation operations and can …
Convolution Networks (GCN). These models rely on local aggregation operations and can …
KPGT: knowledge-guided pre-training of graph transformer for molecular property prediction
Designing accurate deep learning models for molecular property prediction plays an
increasingly essential role in drug and material discovery. Recently, due to the scarcity of …
increasingly essential role in drug and material discovery. Recently, due to the scarcity of …
Attending to graph transformers
Recently, transformer architectures for graphs emerged as an alternative to established
techniques for machine learning with graphs, such as (message-passing) graph neural …
techniques for machine learning with graphs, such as (message-passing) graph neural …
Relmole: molecular representation learning based on two-level graph similarities
Molecular representation is a critical part of various prediction tasks for physicochemical
properties of molecules and drug design. As graph notations are common in expressing the …
properties of molecules and drug design. As graph notations are common in expressing the …
Strategies for pre-training graph neural networks
Many applications of machine learning require a model to make accurate pre-dictions on
test examples that are distributionally different from training ones, while task-specific labels …
test examples that are distributionally different from training ones, while task-specific labels …