Making sense of chemical space network shows signs of criticality
N Amoroso, N Gambacorta, F Mastrolorito, MV Togo… - Scientific Reports, 2023 - nature.com
Chemical space modelling has great importance in unveiling and visualising latent
information, which is critical in predictive toxicology related to drug discovery process. While …
information, which is critical in predictive toxicology related to drug discovery process. While …
Quantitative toxicity prediction using topology based multitask deep neural networks
The understanding of toxicity is of paramount importance to human health and
environmental protection. Quantitative toxicity analysis has become a new standard in the …
environmental protection. Quantitative toxicity analysis has become a new standard in the …
Equivariant graph neural networks for toxicity prediction
J Cremer, L Medrano Sandonas… - Chemical Research …, 2023 - ACS Publications
Predictive modeling of toxicity is a crucial step in the drug discovery pipeline. It can help filter
out molecules with a high probability of failing in the early stages of de novo drug design …
out molecules with a high probability of failing in the early stages of de novo drug design …
Towards decoding hepatotoxicity of approved drugs through navigation of multiverse and consensus chemical spaces
E López-López, JL Medina-Franco - Biomolecules, 2023 - mdpi.com
Drug-induced liver injury (DILI) is the principal reason for failure in developing drug
candidates. It is the most common reason to withdraw from the market after a drug has been …
candidates. It is the most common reason to withdraw from the market after a drug has been …
MouseTox: An online toxicity assessment tool for small molecules through Enalos Cloud platform
Advances in the drug discovery research substantially depend on in silico methods and
techniques that capitalize on experimental data to enable the accurate property/activity …
techniques that capitalize on experimental data to enable the accurate property/activity …
Navigating transcriptomic connectivity mapping workflows to link chemicals with bioactivities
Screening new compounds for potential bioactivities against cellular targets is vital for drug
discovery and chemical safety. Transcriptomics offers an efficient approach for assessing …
discovery and chemical safety. Transcriptomics offers an efficient approach for assessing …
The impact of network biology in pharmacology and toxicology
G Panagiotou, O Taboureau - SAR and QSAR in Environmental …, 2012 - Taylor & Francis
With the need to investigate alternative approaches and emerging technologies in order to
increase drug efficacy and reduce adverse drug effects, network biology offers a novel way …
increase drug efficacy and reduce adverse drug effects, network biology offers a novel way …
Use of connectivity mapping to support read across: A deeper dive using data from 186 chemicals, 19 cell lines and 2 case studies
KN De Abrew, YK Shan, X Wang, JM Krailler… - Toxicology, 2019 - Elsevier
We previously demonstrated that the Connectivity Map (CMap)(Lamb et al., 2006) concept
can be successfully applied to a predictive toxicology paradigm to generate meaningful MoA …
can be successfully applied to a predictive toxicology paradigm to generate meaningful MoA …
embryoTox: using graph-based signatures to predict the teratogenicity of small molecules
Teratogenic drugs can lead to extreme fetal malformation and consequently critically
influence the fetus's health, yet the teratogenic risks associated with most approved drugs …
influence the fetus's health, yet the teratogenic risks associated with most approved drugs …
Visualizing chemical space networks with RDKit and NetworkX
VF Scalfani, VD Patel, AM Fernandez - Journal of Cheminformatics, 2022 - Springer
This article demonstrates how to create Chemical Space Networks (CSNs) using a Python
RDKit and NetworkX workflow. CSNs are a type of network visualization that depict …
RDKit and NetworkX workflow. CSNs are a type of network visualization that depict …