Predicting solvation free energies with an implicit solvent machine learning potential
S Röcken, AF Burnet, J Zavadlav - arXiv preprint arXiv:2406.00183, 2024 - arxiv.org
Machine learning (ML) potentials are a powerful tool in molecular modeling, enabling ab
initio accuracy for comparably small computational costs. Nevertheless, all-atom simulations …
initio accuracy for comparably small computational costs. Nevertheless, all-atom simulations …
Improving the Accuracy of Physics-Based Hydration-Free Energy Predictions by Machine Learning the Remaining Error Relative to the Experiment
L Bass, LH Elder, DE Folescu… - Journal of chemical …, 2023 - ACS Publications
The accuracy of computational models of water is key to atomistic simulations of
biomolecules. We propose a computationally efficient way to improve the accuracy of the …
biomolecules. We propose a computationally efficient way to improve the accuracy of the …
Graph-based approaches for predicting solvation energy in multiple solvents: open datasets and machine learning models
The solvation properties of molecules, often estimated using quantum chemical simulations,
are important in the synthesis of energy storage materials, drugs, and industrial chemicals …
are important in the synthesis of energy storage materials, drugs, and industrial chemicals …
[HTML][HTML] A general graph neural network based implicit solvation model for organic molecules in water
P Katzberger, S Riniker - Chemical Science, 2024 - pubs.rsc.org
The dynamical behavior of small molecules in their environment can be studied with
classical molecular dynamics (MD) simulations to gain deeper insight on an atomic level …
classical molecular dynamics (MD) simulations to gain deeper insight on an atomic level …
[HTML][HTML] Machine learning of free energies in chemical compound space using ensemble representations: Reaching experimental uncertainty for solvation
J Weinreich, NJ Browning… - The Journal of Chemical …, 2021 - pubs.aip.org
Free energies govern the behavior of soft and liquid matter, and improving their predictions
could have a large impact on the development of drugs, electrolytes, or homogeneous …
could have a large impact on the development of drugs, electrolytes, or homogeneous …
Explainable solvation free energy prediction combining graph neural networks with chemical intuition
K Low, ML Coote, EI Izgorodina - Journal of Chemical Information …, 2022 - ACS Publications
The prediction of a molecule's solvation Gibbs free (Δ G solv) energy in a given solvent is an
important task which has traditionally been carried out via quantum chemical continuum …
important task which has traditionally been carried out via quantum chemical continuum …
[HTML][HTML] Delfos: deep learning model for prediction of solvation free energies in generic organic solvents
Prediction of aqueous solubilities or hydration free energies is an extensively studied area in
machine learning applications in chemistry since water is the sole solvent in the living …
machine learning applications in chemistry since water is the sole solvent in the living …
[HTML][HTML] Accurately predicting solvation free energy in aqueous and organic solvents beyond 298 K by combining deep learning and the 1D reference interaction site …
DJ Fowles, RG McHardy, A Ahmad, DS Palmer - Digital Discovery, 2023 - pubs.rsc.org
We report a method to predict the absolute solvation free energy (SFE) of small organic and
druglike molecules in water, carbon tetrachloride and chloroform solvents beyond 298 K by …
druglike molecules in water, carbon tetrachloride and chloroform solvents beyond 298 K by …
[HTML][HTML] Machine learning implicit solvation for molecular dynamics
Accurate modeling of the solvent environment for biological molecules is crucial for
computational biology and drug design. A popular approach to achieve long simulation time …
computational biology and drug design. A popular approach to achieve long simulation time …
Explainable supervised machine learning model to predict solvation gibbs energy
J Ferraz-Caetano, F Teixeira… - Journal of Chemical …, 2023 - ACS Publications
Many challenges persist in developing accurate computational models for predicting
solvation free energy (Δ G sol). Despite recent developments in Machine Learning (ML) …
solvation free energy (Δ G sol). Despite recent developments in Machine Learning (ML) …