The synthesizability of molecules proposed by generative models

W Gao, CW Coley - Journal of chemical information and modeling, 2020 - ACS Publications
The discovery of functional molecules is an expensive and time-consuming process,
exemplified by the rising costs of small molecule therapeutic discovery. One class of …

Deep Generative Models in De Novo Drug Molecule Generation

C Pang, J Qiao, X Zeng, Q Zou… - Journal of Chemical …, 2023 - ACS Publications
The discovery of new drugs has important implications for human health. Traditional
methods for drug discovery rely on experiments to optimize the structure of lead molecules …

[HTML][HTML] On failure modes in molecule generation and optimization

P Renz, D Van Rompaey, JK Wegner… - Drug Discovery Today …, 2019 - Elsevier
There has been a wave of generative models for molecules triggered by advances in the
field of Deep Learning. These generative models are often used to optimize chemical …

Deep learning for molecular generation

Y Xu, K Lin, S Wang, L Wang, C Cai… - Future medicinal …, 2019 - Taylor & Francis
De novo drug design aims to generate novel chemical compounds with desirable chemical
and pharmacological properties from scratch using computer-based methods. Recently …

Generative models for molecular discovery: Recent advances and challenges

C Bilodeau, W Jin, T Jaakkola… - Wiley …, 2022 - Wiley Online Library
Abstract Development of new products often relies on the discovery of novel molecules.
While conventional molecular design involves using human expertise to propose …

Retrieval-based controllable molecule generation

Z Wang, W Nie, Z Qiao, C Xiao, R Baraniuk… - arXiv preprint arXiv …, 2022 - arxiv.org
Generating new molecules with specified chemical and biological properties via generative
models has emerged as a promising direction for drug discovery. However, existing …

Molecular sets (MOSES): a benchmarking platform for molecular generation models

D Polykovskiy, A Zhebrak… - Frontiers in …, 2020 - frontiersin.org
Generative models are becoming a tool of choice for exploring the molecular space. These
models learn on a large training dataset and produce novel molecular structures with similar …

Generative molecular design in low data regimes

M Moret, L Friedrich, F Grisoni, D Merk… - Nature Machine …, 2020 - nature.com
Generative machine learning models sample molecules from chemical space without the
need for explicit design rules. To enable the generative design of innovative molecular …

Generative models should at least be able to design molecules that dock well: A new benchmark

T Cieplinski, T Danel, S Podlewska… - Journal of Chemical …, 2023 - ACS Publications
Designing compounds with desired properties is a key element of the drug discovery
process. However, measuring progress in the field has been challenging due to the lack of …

RetroGNN: fast estimation of synthesizability for virtual screening and de novo design by learning from slow retrosynthesis software

CH Liu, M Korablyov, S Jastrzebski… - Journal of Chemical …, 2022 - ACS Publications
De novo molecule design algorithms often result in chemically unfeasible or synthetically
inaccessible molecules. A natural idea to mitigate this problem is to bias these algorithms …