Recognition and cleavage of DNA by type‐II restriction endonucleases

A Pingoud, A Jeltsch - European Journal of Biochemistry, 1997 - Wiley Online Library
Restriction endonucleases are enzymes which recognize short DNA sequences and cleave
the DNA in both strands. Depending on the enzymological properties different types are …

NMR studies of water bound to biological molecules

G Otting - Progress in Nuclear Magnetic Resonance …, 1997 - Elsevier
1. Introduction.......................... 2. Theoretical background for intermolecular NOES........... 2.1.
NOE between two rigidly bound protons............. 2.2. NOE between solute proton and bound …

Compositional biases of bacterial genomes and evolutionary implications

S Karlin, J Mrazek, AM Campbell - Journal of bacteriology, 1997 - Am Soc Microbiol
We compare and contrast genome-wide compositional biases and distributions of short
oligonucleotides across 15 diverse prokaryotes that have substantial genomic sequence …

Solution structure of the N-terminal zinc binding domain of HIV-1 integrase

M Cai, R Zheng, M Caffrey, R Craigie, GM Clore… - Nature structural …, 1997 - nature.com
The solution structure of the N-terminal zinc binding domain (residues 1–55; IN1–55) of HIV-
1 integrase has been solved by NMR spectroscopy. IN1–55 is dimeric, and each monomer …

[25] Ribbons

M Carson - Methods in enzymology, 1997 - Elsevier
Publisher Summary The Ribbons software interactively displays molecular models, analyzes
crystallographic results, and creates publication-quality images. The ribbon drawing …

Crystal structure of the unique RNA-binding domain of the influenza virus NS1 protein.

J Liu, PA Lynch, CY Chien, GT Montelione… - Nature structural …, 1997 - europepmc.org
Crystal structure of the unique RNA-binding domain of the influenza virus NS1 protein. - Abstract
- Europe PMC Sign in | Create an account https://orcid.org Europe PMC Menu About Tools …

Protein—DNA recognition complexes: Conservation of structure and binding energy in the transition state

L Jen‐Jacobson - Biopolymers: Original Research on …, 1997 - Wiley Online Library
This paper considers how enzymes that catalyze reactions at specific DNA sites have been
engineered to overcome the problem of competitive inhibition by excess nonspecific binding …

Predicting conserved water-mediated and polar ligand interactions in proteins using a K-nearest-neighbors genetic algorithm

ML Raymer, PC Sanschagrin, WF Punch… - Journal of molecular …, 1997 - Elsevier
Water-mediated ligand interactions are essential to biological processes, from product
displacement in thymidylate synthase to DNA recognition by Trp repressor, yet the structural …

Structure and dynamics of the iron responsive element RNA: implications for binding of the RNA by iron regulatory binding proteins

KJ Addess, JP Basilion, RD Klausner… - Journal of molecular …, 1997 - Elsevier
The iron responsive element (IRE) is a∼ 30 nucleotide RNA hairpin that is located in the 5′
untranslated region of all ferritin mRNAs and in the 3′ untranslated region of all transferrin …

The role of water in protein—DNA interactions

JWR Schwabe - Current opinion in structural biology, 1997 - Elsevier
It is becoming well accepted that water plays an important role in both the specificity and
affinity of protein—DNA interactions. Recently, a combination of structural, biochemical and …