Comparative DNA analysis across diverse genomes

S Karlin, AM Campbell, J Mrazek - Annual review of genetics, 1998 - annualreviews.org
▪ Abstract We review concepts and methods for comparative analysis of complete genomes
including assessments of genomic compositional contrasts based on dinucleotide and …

DNA: structure and function

RR Sinden, CE Pearson, VN Potaman… - Advances in genome …, 1998 - Elsevier
Publisher Summary This chapter discusses the structure and function of DNA. DNA occupies
a critical role in cells, because it is the source of all intrinsic genetic information. Chemically …

DNA sequence-dependent deformability deduced from protein–DNA crystal complexes

WK Olson, AA Gorin, XJ Lu… - Proceedings of the …, 1998 - National Acad Sciences
The deformability of double helical DNA is critical for its packaging in the cell, recognition by
other molecules, and transient opening during biochemically important processes. Here, a …

Technical aspects of NMR spectroscopy with biological macromolecules and studies of hydration in solution

G Wider - Progress in nuclear magnetic resonance spectroscopy, 1998 - Elsevier
The first nuclear magnetic resonance (NMR) spectrum of a protein was published some forty
years ago [l] and ever since, NMR of biological macromolecules has been a growing field in …

New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB

T Lagrange, AN Kapanidis, H Tang… - Genes & …, 1998 - genesdev.cshlp.org
A sequence element located immediately upstream of the TATA element, and having the
consensus sequence 5′-G/CG/CG/ACGCC-3′, affects the ability of transcription factor IIB …

Thousands of proteins likely to have long disordered regions.

P Romero, Z Obradovic, CR Kissinger, JE Villafranca… - 1998 - books.google.com
Neural network predictors of protein disorder using primary sequence information were
developed and applied to the Swiss Protein Database. More than 15,000 proteins were …

DNA bending: the prevalence of kinkiness and the virtues of normality

RE Dickerson - Nucleic acids research, 1998 - academic.oup.com
DNA bending in 86 complexes with sequence-specific proteins has been examined using
normal vector plots, matrices of normal vector angles between all base pairs in the helix, and …

Structure of the metal-ion-activated diphtheria toxin repressor/ tox operator complex

A White, X Ding, JC Vanderspek, JR Murphy, D Ringe - Nature, 1998 - nature.com
The virulent phenotype of the pathogenic bacterium Corynebacterium diphtheriae is
conferred by diphtheria toxin, whose expression is an adaptive response to low …

A role for CH… O interactions in protein-DNA recognition

Y Mandel-Gutfreund, H Margalit, RL Jernigan… - Journal of molecular …, 1998 - Elsevier
The concept of CH… O hydrogen bonds has recently gained much interest, with a number of
reports indicating the significance of these non-classical hydrogen bonds in stabilizing …

The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA

YG Gao, SY Su, H Robinson, S Padmanabhan… - Nature structural …, 1998 - nature.com
Sso7d and Sac7d are two small (~ 7,000 M r), but abundant, chromosomal proteins from the
hyperthermophilic archaeabacteria Sulfolobus solfataricus and S. acidocaldarius …