DNA methylation and cancer
PM Das, R Singal - Journal of clinical oncology, 2004 - ascopubs.org
DNA methylation is an important regulator of gene transcription, and its role in
carcinogenesis has been a topic of considerable interest in the last few years. Alterations in …
carcinogenesis has been a topic of considerable interest in the last few years. Alterations in …
ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
Chromatin immunoprecipitation (ChIP) is a well-established procedure used to investigate
interactions between proteins and DNA. Coupled with whole-genome DNA microarrays …
interactions between proteins and DNA. Coupled with whole-genome DNA microarrays …
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
University of Utah Weiss Robert B. 14 Dunn Diane M … - Nature, 2004 - nature.com
The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine
and drug development, having made inestimable contributions to human health. We report …
and drug development, having made inestimable contributions to human health. We report …
Epigenetics and cancer
AH Lund, M van Lohuizen - Genes & development, 2004 - genesdev.cshlp.org
Epigenetic mechanisms act to change the accessibility of chromatin to transcriptional
regulation locally and globally via modifications of the DNA and by modification or …
regulation locally and globally via modifications of the DNA and by modification or …
An evaluation of new criteria for CpG islands in the human genome as gene markers
Motivation: Recently, more stringent criteria for CpG islands have been introduced to
exclude Alu repeats, thereby enabling a higher proportion of CpG islands associating with …
exclude Alu repeats, thereby enabling a higher proportion of CpG islands associating with …
[HTML][HTML] DNA methylation profiling of the human major histocompatibility complex: a pilot study for the human epigenome project
VK Rakyan, T Hildmann, KL Novik, J Lewin, J Tost… - PLoS …, 2004 - journals.plos.org
The Human Epigenome Project aims to identify, catalogue, and interpret genome-wide DNA
methylation phenomena. Occurring naturally on cytosine bases at cytosine–guanine …
methylation phenomena. Occurring naturally on cytosine bases at cytosine–guanine …
Comparative genomics
▪ Abstract The genomes from three mammals (human, mouse, and rat), two worms, and
several yeasts have been sequenced, and more genomes will be completed in the near …
several yeasts have been sequenced, and more genomes will be completed in the near …
Specific histone tail modification and not DNA methylation is a determinant of herpes simplex virus type 1 latent gene expression
NJ Kubat, RK Tran, P McAnany, DC Bloom - Journal of virology, 2004 - Am Soc Microbiol
During herpes simplex virus type 1 (HSV-1) latency, gene expression is tightly repressed
except for the latency-associated transcript (LAT). The mechanistic basis for this repression …
except for the latency-associated transcript (LAT). The mechanistic basis for this repression …
A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q
Y Yamada, H Watanabe, F Miura, H Soejima… - Genome …, 2004 - genome.cshlp.org
Approximately half of all human genes have CpG islands (CGIs) around their promoter
regions. Although CGIs usually escape methylation, those on Chromosome X in females …
regions. Although CGIs usually escape methylation, those on Chromosome X in females …
Multiple variable first exons: a mechanism for cell-and tissue-specific gene regulation
T Zhang, P Haws, Q Wu - Genome research, 2004 - genome.cshlp.org
A large familyof neural protocadherin (Pcdh) proteins is encoded bythree closelylinked
mammalian gene clusters (α, β, and γ). Pcdh α and γ clusters have a striking genomic …
mammalian gene clusters (α, β, and γ). Pcdh α and γ clusters have a striking genomic …