DNA methylation and cancer

PM Das, R Singal - Journal of clinical oncology, 2004 - ascopubs.org
DNA methylation is an important regulator of gene transcription, and its role in
carcinogenesis has been a topic of considerable interest in the last few years. Alterations in …

ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments

MJ Buck, JD Lieb - Genomics, 2004 - Elsevier
Chromatin immunoprecipitation (ChIP) is a well-established procedure used to investigate
interactions between proteins and DNA. Coupled with whole-genome DNA microarrays …

Genome sequence of the Brown Norway rat yields insights into mammalian evolution

University of Utah Weiss Robert B. 14 Dunn Diane M … - Nature, 2004 - nature.com
The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine
and drug development, having made inestimable contributions to human health. We report …

Epigenetics and cancer

AH Lund, M van Lohuizen - Genes & development, 2004 - genesdev.cshlp.org
Epigenetic mechanisms act to change the accessibility of chromatin to transcriptional
regulation locally and globally via modifications of the DNA and by modification or …

An evaluation of new criteria for CpG islands in the human genome as gene markers

Y Wang, FCC Leung - Bioinformatics, 2004 - academic.oup.com
Motivation: Recently, more stringent criteria for CpG islands have been introduced to
exclude Alu repeats, thereby enabling a higher proportion of CpG islands associating with …

[HTML][HTML] DNA methylation profiling of the human major histocompatibility complex: a pilot study for the human epigenome project

VK Rakyan, T Hildmann, KL Novik, J Lewin, J Tost… - PLoS …, 2004 - journals.plos.org
The Human Epigenome Project aims to identify, catalogue, and interpret genome-wide DNA
methylation phenomena. Occurring naturally on cytosine bases at cytosine–guanine …

Comparative genomics

W Miller, KD Makova, A Nekrutenko… - Annu. Rev. Genomics …, 2004 - annualreviews.org
▪ Abstract The genomes from three mammals (human, mouse, and rat), two worms, and
several yeasts have been sequenced, and more genomes will be completed in the near …

Specific histone tail modification and not DNA methylation is a determinant of herpes simplex virus type 1 latent gene expression

NJ Kubat, RK Tran, P McAnany, DC Bloom - Journal of virology, 2004 - Am Soc Microbiol
During herpes simplex virus type 1 (HSV-1) latency, gene expression is tightly repressed
except for the latency-associated transcript (LAT). The mechanistic basis for this repression …

A comprehensive analysis of allelic methylation status of CpG islands on human chromosome 21q

Y Yamada, H Watanabe, F Miura, H Soejima… - Genome …, 2004 - genome.cshlp.org
Approximately half of all human genes have CpG islands (CGIs) around their promoter
regions. Although CGIs usually escape methylation, those on Chromosome X in females …

Multiple variable first exons: a mechanism for cell-and tissue-specific gene regulation

T Zhang, P Haws, Q Wu - Genome research, 2004 - genome.cshlp.org
A large familyof neural protocadherin (Pcdh) proteins is encoded bythree closelylinked
mammalian gene clusters (α, β, and γ). Pcdh α and γ clusters have a striking genomic …