Polyploidy, hybridization and reticulate evolution: lessons from the Brassicaceae

K Marhold, J Lihová - Plant systematics and evolution, 2006 - Springer
The family Brassicaceae is well known for its large variation in chromosome numbers,
common occurrence of polyploids and many reports of interspecific gene flow. The present …

From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction

CE Hughes, RJ Eastwood… - … Transactions of the …, 2006 - royalsocietypublishing.org
Phylogenetic analyses of DNA sequences have prompted spectacular progress in
assembling the Tree of Life. However, progress in constructing phylogenies among closely …

DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach

SG Newmaster, AJ Fazekas, S Ragupathy - Botany, 2006 - cdnsciencepub.com
DNA barcoding based on the mitochondrial cytochrome c oxidase 1 (cox1) sequence is
being employed for diverse groups of animals with demonstrated success in species …

Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a …

F Wu, LA Mueller, D Crouzillat, V Pétiard… - Genetics, 2006 - academic.oup.com
We report herein the application of a set of algorithms to identify a large number (2869) of
single-copy orthologs (COSII), which are shared by most, if not all, euasterid plant species …

Reconstructing the evolutionary history of polyploids from multilabeled trees

KT Huber, B Oxelman, M Lott… - Molecular Biology and …, 2006 - academic.oup.com
In recent studies, phylogenetic networks have been derived from so-called multilabeled
trees in order to understand the origins of certain polyploids. Although the trees used in …

Phylogeny, genome size, and chromosome evolution of Asparagales

JC Pires, IJ Maureira, TJ Givnish… - Aliso: A Journal of …, 2006 - scholarship.claremont.edu
Asparagales are a diverse monophyletic order that has numerous species (ca. 50% of
monocots) including important crop plants such as Allium, Asparagus, and Vanilla, and a …

Allopolyploid origin of Cardamine asarifolia (Brassicaceae): incongruence between plastid and nuclear ribosomal DNA sequences solved by a single-copy nuclear …

J Lihová, KK Shimizu, K Marhold - Molecular phylogenetics and evolution, 2006 - Elsevier
Interspecific hybridization and polyploidization have played central roles in plant
diversification. However, technical difficulties in the analyses of low-copy genes have limited …

Phylogenetic relationships and biogeography within the Eurasian clade of Amaryllidaceae based on plastid ndhF and nrDNA ITS sequences: lineage sorting in a …

AW Meerow, J Francisco-Ortega, DN Kuhn… - Systematic …, 2006 - ingentaconnect.com
The monophyletic Eurasian clade of Amaryllidaceae was analyzed using plastid ndhF and
rDNA ITS sequences for 33 and 29 taxa, respectively; all genera were represented by at …

Phylogeny of major lineages in Melastomataceae, subfamily Olisbeoideae: utility of nuclear glyceraldehyde 3-phosphate dehydrogenase (GapC) gene sequences

RD Stone - Systematic botany, 2006 - ingentaconnect.com
Evidence is presented for phylogenetic relationships in pantropical Melastomataceae,
subfamily Olisbeoideae based on combined exon and intron sequences of the nuclear …

Development of nuclear gene-derived molecular markers linked to legume genetic maps

HK Choi, MA Luckow, J Doyle, DR Cook - Molecular Genetics and …, 2006 - Springer
The systematic identification of the orthologous features of related organisms greatly
facilitates comparative genomics, including research on genome evolution and comparative …