Enhancements and modifications of primer design program Primer3
T Koressaar, M Remm - Bioinformatics, 2007 - academic.oup.com
The determination of annealing temperature is a critical step in PCR design. This parameter
is typically derived from the melting temperature of the PCR primers, so for successful PCR …
is typically derived from the melting temperature of the PCR primers, so for successful PCR …
A coarse grain model for DNA
TA Knotts, N Rathore, DC Schwartz… - The Journal of chemical …, 2007 - pubs.aip.org
Over the past two decades, significant experimental advances have increased our ability to
control and manipulate individual DNA molecules. This capability has permitted …
control and manipulate individual DNA molecules. This capability has permitted …
Nucleic acid hydration: a volumetric perspective
TV Chalikian, RB Macgregor Jr - Physics of life reviews, 2007 - Elsevier
Hydration represents a major force governing the conformational preferences and drug
binding properties of nucleic acids. Volumetric measurements have proven useful in …
binding properties of nucleic acids. Volumetric measurements have proven useful in …
Specific binding of different vesicle populations by the hybridization of membrane-anchored DNA
PA Beales, TK Vanderlick - The Journal of Physical Chemistry A, 2007 - ACS Publications
We demonstrate a method of heterogeneous vesicle binding using membrane-anchored,
single-stranded DNA that can be used over several orders of magnitude in vesicle size, as …
single-stranded DNA that can be used over several orders of magnitude in vesicle size, as …
[HTML][HTML] RNA helix stability in mixed Na+/Mg2+ solution
ZJ Tan, SJ Chen - Biophysical journal, 2007 - cell.com
A recently developed tightly bound ion model can account for the correlation and fluctuation
(ie, different binding modes) of bound ions. However, the model cannot treat mixed ion …
(ie, different binding modes) of bound ions. However, the model cannot treat mixed ion …
Measurement of the effect of monovalent cations on RNA hairpin stability
Using optical tweezers, we have measured the effect of monovalent cation concentration
and species on the folding free energy of five large (49− 124 nt) RNA hairpins, including HIV …
and species on the folding free energy of five large (49− 124 nt) RNA hairpins, including HIV …
Unlabeled oligonucleotides as internal temperature controls for genotyping by amplicon melting
MT Seipp, JD Durtschi, MA Liew, J Williams… - The Journal of Molecular …, 2007 - Elsevier
Amplicon melting is a closed-tube method for genotyping that does not require probes, real-
time analysis, or allele-specific polymerase chain reaction. However, correct differentiation …
time analysis, or allele-specific polymerase chain reaction. However, correct differentiation …
Optimal primer design using the novel primer design program: MSPprimer provides accurate methylation analysis of the ATM promoter
Methylation-specific polymerase chain reaction (PCR)(MSP) is frequently used to study
gene silencing by promoter hypermethylation. However, non-specific primer design can lead …
gene silencing by promoter hypermethylation. However, non-specific primer design can lead …
PEMC-based method of measuring DNA hybridization at femtomolar concentration directly in human serum and in the presence of copious noncomplementary …
K Rijal, R Mutharasan - Analytical chemistry, 2007 - ACS Publications
Piezoelectric-excited, millimeter-sized cantilever (PEMC) sensors having high-mode
resonance near 1 MHz are shown to exhibit mass change sensitivity of 1− 300 ag/Hz. Gold …
resonance near 1 MHz are shown to exhibit mass change sensitivity of 1− 300 ag/Hz. Gold …
Relationship between the structure and the DNA binding properties of diazoniapolycyclic duplex-and triplex-DNA binders: efficiency, selectivity, and binding mode
S Basili, A Bergen, F Dall'Acqua, A Faccio… - Biochemistry, 2007 - ACS Publications
The association of dicationic polycyclic ligands, namely, four diazoniapentaphene
derivatives, three diazoniaanthra [1, 2-a] anthracenes, diazoniahexaphene, and a partly …
derivatives, three diazoniaanthra [1, 2-a] anthracenes, diazoniahexaphene, and a partly …