Comparative genomics and molecular dynamics of DNA repeats in eukaryotes

GF Richard, A Kerrest, B Dujon - Microbiology and molecular …, 2008 - Am Soc Microbiol
Repeated elements can be widely abundant in eukaryotic genomes, composing more than
50% of the human genome, for example. It is possible to classify repeated sequences into …

Safety assessment of dairy microorganisms: the hemiascomycetous yeasts

N Jacques, S Casaregola - International journal of food microbiology, 2008 - Elsevier
Hemiascomycetous yeasts constitute a class of unicellular fungi often associated with the
food and drink processing industries. A number of species including Kluveromyces lactis …

De Novo Origination of a New Protein-Coding Gene in Saccharomyces cerevisiae

J Cai, R Zhao, H Jiang, W Wang - Genetics, 2008 - academic.oup.com
Origination of new genes is an important mechanism generating genetic novelties during the
evolution of an organism. Processes of creating new genes using preexisting genes as the …

Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis

DM Soanes, I Alam, M Cornell, HM Wong, C Hedeler… - PLoS …, 2008 - journals.plos.org
Fungi and oomycetes are the causal agents of many of the most serious diseases of plants.
Here we report a detailed comparative analysis of the genome sequences of thirty-six …

Pervasive and persistent redundancy among duplicated genes in yeast

EJ Dean, JC Davis, RW Davis, DA Petrov - PLoS genetics, 2008 - journals.plos.org
The loss of functional redundancy is the key process in the evolution of duplicated genes.
Here we systematically assess the extent of functional redundancy among a large set of …

Fungal cytochrome P450 database

J Park, S Lee, J Choi, K Ahn, B Park, J Park, S Kang… - BMC genomics, 2008 - Springer
Background Cytochrome P450 enzymes play critical roles in fungal biology and ecology. To
support studies on the roles and evolution of cytochrome P450 enzymes in fungi based on …

Apical Sterol-rich Membranes Are Essential for Localizing Cell End Markers That Determine Growth Directionality in the Filamentous Fungus Aspergillus nidulans

N Takeshita, Y Higashitsuji, S Konzack… - Molecular biology of …, 2008 - Am Soc Cell Biol
In filamentous fungi, hyphal extension depends on the continuous delivery of vesicles to the
growing tip. Here, we describe the identification of two cell end marker proteins, TeaA and …

Dif1 is a DNA-damage-regulated facilitator of nuclear import for ribonucleotide reductase

YD Lee, J Wang, JA Stubbe, SJ Elledge - Molecular cell, 2008 - cell.com
The control of dNTP concentrations is critical to the fidelity of DNA synthesis and repair. One
level of regulation is through subcellular localization of ribonucleotide reductase. In …

Evidence for degenerate tetraploidy in bdelloid rotifers

DB Mark Welch, JL Mark Welch… - Proceedings of the …, 2008 - National Acad Sciences
Rotifers of class Bdelloidea have evolved for millions of years apparently without sexual
reproduction. We have sequenced 45-to 70-kb regions surrounding the four copies of the …

A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast

DR Scannell, KH Wolfe - Genome research, 2008 - genome.cshlp.org
It is widely accepted that newly arisen duplicate gene pairs experience an altered selective
regime that is often manifested as an increase in the rate of protein sequence evolution …