Is there a molecular key to the level of “biological species” in eukaryotes? A DNA guide

AW Coleman - Molecular phylogenetics and evolution, 2009 - Elsevier
DNA sequences, powerful for phylogeny, have not yet proven as rewarding for taxonomic
categorization purposes. However, further analyses of one locus, the second Internal …

[HTML][HTML] Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes

PP Edger, JC Pires - Chromosome Research, 2009 - Springer
Whole genome duplications (WGDs) followed by diploidization, which includes gene loss,
have been an important recurrent process in the evolution of higher eukaryotes. Gene …

5.8 S-28S rRNA interaction and HMM-based ITS2 annotation

A Keller, T Schleicher, J Schultz, T Müller, T Dandekar… - Gene, 2009 - Elsevier
The internal transcribed spacer 2 (ITS2) of the nuclear ribosomal repeat unit is one of the
most commonly applied phylogenetic markers. It is a fast evolving locus, which makes it …

A statistical approach for distinguishing hybridization and incomplete lineage sorting

S Joly, PA McLenachan… - The American …, 2009 - journals.uchicago.edu
The extent and evolutionary significance of hybridization is difficult to evaluate because of
the difficulty in distinguishing hybridization from incomplete lineage sorting. Here we present …

[HTML][HTML] Shape-shifting corals: Molecular markers show morphology is evolutionarily plastic in Porites

ZH Forsman, DJ Barshis, CL Hunter… - BMC evolutionary biology, 2009 - Springer
Background Corals are notoriously difficult to identify at the species-level due to few
diagnostic characters and variable skeletal morphology. This' coral species problem'is an …

Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae)

ML Aïnouche, PM Fortune, A Salmon, C Parisod… - Biological …, 2009 - Springer
In this paper, we examine how the Spartina system has helped our understanding of the
genomic aspects of allopolyploid speciation in the context of biological invasion. More …

DNA barcoding will frequently fail in complicated groups: an example in wild potatoes

DM Spooner - American journal of botany, 2009 - Wiley Online Library
DNA barcoding (“barcoding”) has been proposed as a rapid and practical molecular method
to identify species via diagnostic variation in short orthologous DNA sequences from one or …

ITS2 sequence–structure analysis in phylogenetics: a how-to manual for molecular systematics

J Schultz, M Wolf - Molecular phylogenetics and evolution, 2009 - Elsevier
The information that can be obtained from the secondary structure of the nuclear ribosomal
internal transcribed spacer 2 (ITS2) is substantial, and yet many studies exploit this …

Tracking the evolutionary history of polyploidy in Fragaria L.(strawberry): new insights from phylogenetic analyses of low-copy nuclear genes

M Rousseau-Gueutin, A Gaston, A Aïnouche… - Molecular phylogenetics …, 2009 - Elsevier
Phylogenetic utility of two nuclear genes (GBSSI-2 and DHAR) was explored in genus
Fragaria in order to clarify phylogenetic relationships among taxa and to elucidate the origin …

Plant DNA barcodes and species resolution in sedges (Carex, Cyperaceae)

JR Starr, RFC Naczi… - Molecular ecology …, 2009 - Wiley Online Library
We investigate the species discriminatory power of a subset of the proposed plant barcoding
loci (matK, rbcL, rpoC1, rpoB, trnH‐psbA) in Carex, a cosmopolitan genus that represents …