ChIP–seq: advantages and challenges of a maturing technology
PJ Park - Nature reviews genetics, 2009 - nature.com
Chromatin immunoprecipitation followed by sequencing (ChIP–seq) is a technique for
genome-wide profiling of DNA-binding proteins, histone modifications or nucleosomes …
genome-wide profiling of DNA-binding proteins, histone modifications or nucleosomes …
The biology of chromatin remodeling complexes
CR Clapier, BR Cairns - Annual review of biochemistry, 2009 - annualreviews.org
The packaging of chromosomal DNA by nucleosomes condenses and organizes the
genome, but occludes many regulatory DNA elements. However, this constraint also allows …
genome, but occludes many regulatory DNA elements. However, this constraint also allows …
Nucleosome positioning and gene regulation: advances through genomics
C Jiang, BF Pugh - Nature Reviews Genetics, 2009 - nature.com
Knowing the precise locations of nucleosomes in a genome is key to understanding how
genes are regulated. Recent'next generation'ChIP–chip and ChIP–Seq technologies have …
genes are regulated. Recent'next generation'ChIP–chip and ChIP–Seq technologies have …
[HTML][HTML] The DNA-encoded nucleosome organization of a eukaryotic genome
N Kaplan, IK Moore, Y Fondufe-Mittendorf, AJ Gossett… - Nature, 2009 - nature.com
Nucleosome organization is critical for gene regulation. In living cells this organization is
determined by multiple factors, including the action of chromatin remodellers, competition …
determined by multiple factors, including the action of chromatin remodellers, competition …
Bidirectional promoters generate pervasive transcription in yeast
Genome-wide pervasive transcription has been reported in many eukaryotic organisms,,,,,,,
revealing a highly interleaved transcriptome organization that involves hundreds of …
revealing a highly interleaved transcriptome organization that involves hundreds of …
H3. 3/H2A. Z double variant–containing nucleosomes mark'nucleosome-free regions' of active promoters and other regulatory regions
To understand how chromatin structure is organized by different histone variants, we have
measured the genome-wide distribution of nucleosome core particles (NCPs) containing the …
measured the genome-wide distribution of nucleosome core particles (NCPs) containing the …
Histones: annotating chromatin
EI Campos, D Reinberg - Annual review of genetics, 2009 - annualreviews.org
Chromatin is a highly regulated nucleoprotein complex through which genetic material is
structured and maneuvered to elicit cellular processes, including transcription, cell division …
structured and maneuvered to elicit cellular processes, including transcription, cell division …
[HTML][HTML] A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling
We describe a broad mechanistic framework for the transcriptional induction of mammalian
primary response genes by Toll-like receptors and other stimuli. One major class of primary …
primary response genes by Toll-like receptors and other stimuli. One major class of primary …
Global mapping of protein-DNA interactions in vivo by digital genomic footprinting
The orchestrated binding of transcriptional activators and repressors to specific DNA
sequences in the context of chromatin defines the regulatory program of eukaryotic …
sequences in the context of chromatin defines the regulatory program of eukaryotic …
The logic of chromatin architecture and remodelling at promoters
BR Cairns - Nature, 2009 - nature.com
The regulation of gene transcription involves a dynamic balance between packaging
regulatory sequences into chromatin and allowing transcriptional regulators access to these …
regulatory sequences into chromatin and allowing transcriptional regulators access to these …