Protein structure determination in living cells by in-cell NMR spectroscopy
D Sakakibara, A Sasaki, T Ikeya, J Hamatsu… - Nature, 2009 - nature.com
Investigating proteins 'at work'in a living environment at atomic resolution is a major goal of
molecular biology, which has not been achieved even though methods for the three …
molecular biology, which has not been achieved even though methods for the three …
Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa
Pseudomonas aeruginosa isolates have a highly conserved core genome representing up
to 90% of the total genomic sequence with additional variable accessory genes, many of …
to 90% of the total genomic sequence with additional variable accessory genes, many of …
Assembling the marine metagenome, one cell at a time
The difficulty associated with the cultivation of most microorganisms and the complexity of
natural microbial assemblages, such as marine plankton or human microbiome, hinder …
natural microbial assemblages, such as marine plankton or human microbiome, hinder …
MicroScope: a platform for microbial genome annotation and comparative genomics
The initial outcome of genome sequencing is the creation of long text strings written in a four
letter alphabet. The role of in silico sequence analysis is to assist biologists in the act of …
letter alphabet. The role of in silico sequence analysis is to assist biologists in the act of …
Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis
MJ McBride, G Xie, EC Martens, A Lapidus… - Applied and …, 2009 - Am Soc Microbiol
ABSTRACT The 6.10-Mb genome sequence of the aerobic chitin-digesting gliding
bacterium Flavobacterium johnsoniae (phylum Bacteroidetes) is presented. F. johnsoniae is …
bacterium Flavobacterium johnsoniae (phylum Bacteroidetes) is presented. F. johnsoniae is …
Horizontal gene transfer of the secretome drives the evolution of bacterial cooperation and virulence
Background Microbes engage in a remarkable array of cooperative behaviors, secreting
shared proteins that are essential for foraging, shelter, microbial warfare, and virulence …
shared proteins that are essential for foraging, shelter, microbial warfare, and virulence …
Genome Sequence of the Versatile Fish Pathogen Edwardsiella tarda Provides Insights into its Adaptation to Broad Host Ranges and Intracellular Niches
Q Wang, M Yang, J Xiao, H Wu, X Wang, Y Lv, L Xu… - PloS one, 2009 - journals.plos.org
Background Edwardsiella tarda is the etiologic agent of edwardsiellosis, a devastating fish
disease prevailing in worldwide aquaculture industries. Here we describe the complete …
disease prevailing in worldwide aquaculture industries. Here we describe the complete …
Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes
GL Winsor, T Van Rossum, R Lo, B Khaira… - Nucleic acids …, 2009 - academic.oup.com
Pseudomonas aeruginosa is a well-studied opportunistic pathogen that is particularly known
for its intrinsic antimicrobial resistance, diverse metabolic capacity, and its ability to cause …
for its intrinsic antimicrobial resistance, diverse metabolic capacity, and its ability to cause …
Genetic architecture of intrinsic antibiotic susceptibility
HS Girgis, AK Hottes, S Tavazoie - PloS one, 2009 - journals.plos.org
Background Antibiotic exposure rapidly selects for more resistant bacterial strains, and both
a drug's chemical structure and a bacterium's cellular network affect the types of mutations …
a drug's chemical structure and a bacterium's cellular network affect the types of mutations …
The association of virulence factors with genomic islands
Background It has been noted that many bacterial virulence factor genes are located within
genomic islands (GIs; clusters of genes in a prokaryotic genome of probable horizontal …
genomic islands (GIs; clusters of genes in a prokaryotic genome of probable horizontal …