The Sorghum bicolor genome and the diversification of grasses

AH Paterson, JE Bowers, R Bruggmann, I Dubchak… - Nature, 2009 - nature.com
Sorghum, an African grass related to sugar cane and maize, is grown for food, feed, fibre
and fuel. We present an initial analysis of the∼ 730-megabase Sorghum bicolor (L.) …

The genome of the blood fluke Schistosoma mansoni

M Berriman, BJ Haas, PT LoVerde, RA Wilson… - Nature, 2009 - nature.com
Schistosoma mansoni is responsible for the neglected tropical disease schistosomiasis that
affects 210 million people in 76 countries. Here we present analysis of the 363 megabase …

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome …

JH Mun, SJ Kwon, TJ Yang, YJ Seol, M Jin, JA Kim… - Genome biology, 2009 - Springer
Background Brassica rapa is one of the most economically important vegetable crops
worldwide. Owing to its agronomic importance and phylogenetic position, B. rapa provides a …

Genome-wide analysis of Carica papaya reveals a small NBS resistance gene family

BW Porter, M Paidi, R Ming, M Alam… - Molecular Genetics and …, 2009 - Springer
The majority of plant disease resistance proteins identified to date belong to a limited
number of structural classes, of which those containing nucleotide-binding site (NBS) motifs …

The 2008 update of the Aspergillus nidulans genome annotation: a community effort

JR Wortman, JM Gilsenan, V Joardar, J Deegan… - Fungal Genetics and …, 2009 - Elsevier
The identification and annotation of protein-coding genes is one of the primary goals of
whole-genome sequencing projects, and the accuracy of predicting the primary protein …

Identification and characterization of pseudogenes in the rice gene complement

F Thibaud-Nissen, S Ouyang, CR Buell - BMC genomics, 2009 - Springer
Abstract Background The Osa1 Genome Annotation of rice (Oryza sativa L. ssp. japonica cv.
Nipponbare) is the product of a semi-automated pipeline that does not explicitly predict …

Novel thigmomorphogenetic responses in Carica papaya: touch decreases anthocyanin levels and stimulates petiole cork outgrowths

BW Porter, YJ Zhu, DT Webb, DA Christopher - Annals of botany, 2009 - academic.oup.com
Abstract Background and Aims Because of its rapid growth rate, relative ease of
transformation, sequenced genome and low gene number relative to Arabidopsis, the …

MaizeGDB becomes 'sequence-centric'

TZ Sen, CM Andorf, ML Schaeffer, LC Harper… - Database, 2009 - academic.oup.com
MaizeGDB is the maize research community's central repository for genetic and genomic
information about the crop plant and research model Zea mays ssp. mays. The MaizeGDB …

Carica papaya Genes Regulated by Phytophthora palmivora: A Model System for Genomic Studies of Compatible Phytophthora-plant Interactions

BW Porter, YJ Zhu, DA Christopher - Tropical Plant Biology, 2009 - Springer
Plant pathogenic Phytophthora species are predicted to encode a large arsenal of
'effector'proteins that target and disrupt normal host cell function, but genes regulated by …

建立基因體計畫的計算流程: 序列重組, 基因註解與重建代謝路徑

黃至昶, 黃憲達 - 2009 - ir.lib.nycu.edu.tw
西元2003 年人類計畫完成, 為爾後的生物研究帶來龐大的資源. 近幾年next-generation
sequencing 技術的發展大量的降低定序成本及時間使得物種的定序更佳的容易 …