Protein–protein docking benchmark version 4.0

H Hwang, T Vreven, J Janin… - … : Structure, Function, and …, 2010 - Wiley Online Library
We updated our protein–protein docking benchmark to include complexes that became
available since our previous release. As before, we only considered high‐resolution …

Docking and scoring protein interactions: CAPRI 2009

MF Lensink, SJ Wodak - Proteins: Structure, Function, and …, 2010 - Wiley Online Library
Protein docking algorithms are assessed by evaluating blind predictions performed during
2007–2009 in Rounds 13–19 of the community‐wide experiment on critical assessment of …

Building macromolecular assemblies by information-driven docking

E Karaca, ASJ Melquiond, SJ De Vries… - Molecular & Cellular …, 2010 - ASBMB
Over the last years, large scale proteomics studies have generated a wealth of information of
biomolecular complexes. Adding the structural dimension to the resulting interactomes …

Determining macromolecular assembly structures by molecular docking and fitting into an electron density map

K Lasker, A Sali, HJ Wolfson - Proteins: Structure, Function, and …, 2010 - Wiley Online Library
Structural models of macromolecular assemblies are instrumental for gaining a mechanistic
understanding of cellular processes. Determining these structures is a major challenge for …

A solution model of the complex formed by adrenodoxin and adrenodoxin reductase determined by paramagnetic NMR spectroscopy

PHJ Keizers, B Mersinli, W Reinle, J Donauer… - Biochemistry, 2010 - ACS Publications
Lanthanide tags offer the opportunity to retrieve long-range distance information from NMR
experiments that can be used to guide protein docking. To determine whether sufficient …

Strengths and weaknesses of data‐driven docking in critical assessment of prediction of interactions

SJ de Vries, ASJ Melquiond, PL Kastritis… - Proteins: Structure …, 2010 - Wiley Online Library
The recent CAPRI rounds have introduced new docking challenges in the form of protein‐
RNA complexes, multiple alternative interfaces, and an unprecedented number of targets for …

Delineation of the complement receptor type 2–C3d complex by site-directed mutagenesis and molecular docking

CD Shaw, MJ Storek, KA Young, JM Kovacs… - Journal of molecular …, 2010 - Elsevier
The interactions between the complement receptor type 2 (CR2) and the C3 complement
fragments C3d, C3dg, and iC3b are essential for the initiation of a normal immune response …

Characterization of a novel interaction between Bcl-2 members Diva and Harakiri

L Sborgi, S Barrera-Vilarmau, P Obregón, E de Alba - PLoS One, 2010 - journals.plos.org
Interactions within proteins of the Bcl-2 family are key in the regulation of apoptosis. The
death-inducing members control apoptotic mechanisms partly by antagonizing the …

Structural and Functional Characterization of the Ga-Substituted Ferredoxin from Synechocystis sp. PCC6803, a Mimic of the Native Protein,

X Xu, S Scanu, JS Chung, M Hirasawa, DB Knaff… - Biochemistry, 2010 - ACS Publications
In photosynthetic organisms, ferredoxin (Fd) interacts with many proteins, acting as a shuttle
for electrons from Photosystem I to a group of enzymes involved in NADP+ reduction, sulfur …

Bestimmung des Interaktionsbereiches sowie der Struktur des Adrenodoxins im Komplex mit der Adrenodoxin-Reduktase mit Hilfe der paramagnetischen NMR …

B Mersinli - 2010 - publikationen.sulb.uni-saarland.de
In dieser Arbeit wurden der Interaktionsbereich und die Struktur des Adrenodoxins (Adx) im
Komplex mit der Adrenodoxin-Reduktase (AdR) beschrieben. Beide Proteine sind wichtige …