Protein–protein docking benchmark version 4.0
We updated our protein–protein docking benchmark to include complexes that became
available since our previous release. As before, we only considered high‐resolution …
available since our previous release. As before, we only considered high‐resolution …
Docking and scoring protein interactions: CAPRI 2009
MF Lensink, SJ Wodak - Proteins: Structure, Function, and …, 2010 - Wiley Online Library
Protein docking algorithms are assessed by evaluating blind predictions performed during
2007–2009 in Rounds 13–19 of the community‐wide experiment on critical assessment of …
2007–2009 in Rounds 13–19 of the community‐wide experiment on critical assessment of …
Building macromolecular assemblies by information-driven docking
Over the last years, large scale proteomics studies have generated a wealth of information of
biomolecular complexes. Adding the structural dimension to the resulting interactomes …
biomolecular complexes. Adding the structural dimension to the resulting interactomes …
Determining macromolecular assembly structures by molecular docking and fitting into an electron density map
Structural models of macromolecular assemblies are instrumental for gaining a mechanistic
understanding of cellular processes. Determining these structures is a major challenge for …
understanding of cellular processes. Determining these structures is a major challenge for …
A solution model of the complex formed by adrenodoxin and adrenodoxin reductase determined by paramagnetic NMR spectroscopy
PHJ Keizers, B Mersinli, W Reinle, J Donauer… - Biochemistry, 2010 - ACS Publications
Lanthanide tags offer the opportunity to retrieve long-range distance information from NMR
experiments that can be used to guide protein docking. To determine whether sufficient …
experiments that can be used to guide protein docking. To determine whether sufficient …
Strengths and weaknesses of data‐driven docking in critical assessment of prediction of interactions
The recent CAPRI rounds have introduced new docking challenges in the form of protein‐
RNA complexes, multiple alternative interfaces, and an unprecedented number of targets for …
RNA complexes, multiple alternative interfaces, and an unprecedented number of targets for …
Delineation of the complement receptor type 2–C3d complex by site-directed mutagenesis and molecular docking
The interactions between the complement receptor type 2 (CR2) and the C3 complement
fragments C3d, C3dg, and iC3b are essential for the initiation of a normal immune response …
fragments C3d, C3dg, and iC3b are essential for the initiation of a normal immune response …
Characterization of a novel interaction between Bcl-2 members Diva and Harakiri
L Sborgi, S Barrera-Vilarmau, P Obregón, E de Alba - PLoS One, 2010 - journals.plos.org
Interactions within proteins of the Bcl-2 family are key in the regulation of apoptosis. The
death-inducing members control apoptotic mechanisms partly by antagonizing the …
death-inducing members control apoptotic mechanisms partly by antagonizing the …
Structural and Functional Characterization of the Ga-Substituted Ferredoxin from Synechocystis sp. PCC6803, a Mimic of the Native Protein,
X Xu, S Scanu, JS Chung, M Hirasawa, DB Knaff… - Biochemistry, 2010 - ACS Publications
In photosynthetic organisms, ferredoxin (Fd) interacts with many proteins, acting as a shuttle
for electrons from Photosystem I to a group of enzymes involved in NADP+ reduction, sulfur …
for electrons from Photosystem I to a group of enzymes involved in NADP+ reduction, sulfur …
Bestimmung des Interaktionsbereiches sowie der Struktur des Adrenodoxins im Komplex mit der Adrenodoxin-Reduktase mit Hilfe der paramagnetischen NMR …
B Mersinli - 2010 - publikationen.sulb.uni-saarland.de
In dieser Arbeit wurden der Interaktionsbereich und die Struktur des Adrenodoxins (Adx) im
Komplex mit der Adrenodoxin-Reduktase (AdR) beschrieben. Beide Proteine sind wichtige …
Komplex mit der Adrenodoxin-Reduktase (AdR) beschrieben. Beide Proteine sind wichtige …