Long non-coding RNAs in nervous system function and disease

IA Qureshi, JS Mattick, MF Mehler - Brain research, 2010 - Elsevier
Central nervous system (CNS) development, homeostasis, stress responses, and plasticity
are all mediated by epigenetic mechanisms that modulate gene expression and promote …

Transcribed dark matter: meaning or myth?

CP Ponting, TG Belgard - Human molecular genetics, 2010 - academic.oup.com
Genomic tiling arrays, cDNA sequencing and, more recently, RNA-Seq have provided initial
insights into the extent and depth of transcribed sequence across human and other …

α-Catenin as a tension transducer that induces adherens junction development

S Yonemura, Y Wada, T Watanabe, A Nagafuchi… - Nature cell …, 2010 - nature.com
Adherens junctions (AJs), which are organized by adhesion proteins and the underlying
actin cytoskeleton, probably sense pulling forces from adjacent cells and modulate opposing …

Most “dark matter” transcripts are associated with known genes

H Van Bakel, C Nislow, BJ Blencowe, TR Hughes - PLoS biology, 2010 - journals.plos.org
A series of reports over the last few years have indicated that a much larger portion of the
mammalian genome is transcribed than can be accounted for by currently annotated genes …

Genome-wide computational identification and manual annotation of human long noncoding RNA genes

H Jia, M Osak, GK Bogu, LW Stanton, R Johnson… - Rna, 2010 - rnajournal.cshlp.org
Experimental evidence suggests that half or more of the mammalian transcriptome consists
of noncoding RNA. Noncoding RNAs are divided into short noncoding RNAs (including …

Decoding the function of nuclear long non-coding RNAs

LL Chen, GG Carmichael - Current opinion in cell biology, 2010 - Elsevier
Long non-coding RNAs (lncRNAs) are mRNA-like, non-protein-coding RNAs that are
pervasively transcribed throughout eukaryotic genomes. Rather than silently accumulating …

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is' dark matter'un-annotated RNA

P Kapranov, G St Laurent, T Raz, F Ozsolak… - BMC biology, 2010 - Springer
Background Discovery that the transcriptional output of the human genome is far more
complex than predicted by the current set of protein-coding annotations and that most RNAs …

A global view of genomic information–moving beyond the gene and the master regulator

JS Mattick, RJ Taft, GJ Faulkner - Trends in genetics, 2010 - cell.com
The current view of gene regulation in complex organisms holds that gene expression is
largely controlled by the combinatoric actions of transcription factors and other regulatory …

Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes

RA Chodroff, L Goodstadt, TM Sirey, PL Oliver… - Genome biology, 2010 - Springer
Background Long considered to be the building block of life, it is now apparent that protein is
only one of many functional products generated by the eukaryotic genome. Indeed, more of …

MacroRNA underdogs in a microRNA world: evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA

L Lipovich, R Johnson, CY Lin - Biochimica et Biophysica Acta (BBA)-Gene …, 2010 - Elsevier
The central dogma of molecular biology relegates RNAs to the role of “messengers” of
genetic information, with proteins as the end products that perform key roles as regulators …