Advances in omics and bioinformatics tools for systems analyses of plant functions

K Mochida, K Shinozaki - Plant and Cell Physiology, 2011 - academic.oup.com
Omics and bioinformatics are essential to understanding the molecular systems that underlie
various plant functions. Recent game-changing sequencing technologies have revitalized …

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

C Becker, J Hagmann, J Müller, D Koenig, O Stegle… - Nature, 2011 - nature.com
Heritable epigenetic polymorphisms, such as differential cytosine methylation, can underlie
phenotypic variation,. Moreover, wild strains of the plant Arabidopsis thaliana differ in many …

Multiple reference genomes and transcriptomes for Arabidopsis thaliana

X Gan, O Stegle, J Behr, JG Steffen, P Drewe… - Nature, 2011 - nature.com
Genetic differences between Arabidopsis thaliana accessions underlie the plant's extensive
phenotypic variation, and until now these have been interpreted largely in the context of the …

Genome-Wide Comparison of Nucleotide-Binding Site-Leucine-Rich Repeat-Encoding Genes in Arabidopsis

YL Guo, J Fitz, K Schneeberger, S Ossowski… - Plant …, 2011 - academic.oup.com
Plants, like animals, use several lines of defense against pathogen attack. Prominent among
genes that confer disease resistance are those encoding nucleotide-binding site-leucine …

Double-strand break repair processes drive evolution of the mitochondrial genome in Arabidopsis

JI Davila, MP Arrieta-Montiel, Y Wamboldt, J Cao… - BMC biology, 2011 - Springer
Background The mitochondrial genome of higher plants is unusually dynamic, with
recombination and nonhomologous end-joining (NHEJ) activities producing variability in …

New insights into the FLS2 trafficking and signaling pathway revealing a role for late defense responses in Arabidopsis immunity

T Spallek - 2011 - kups.ub.uni-koeln.de
Pathogen-associated molecular pattern (PAMP) triggered immunity (PTI) enables plants to
efficiently defend themselves against most pathogens. PTI is initiated by plasma membrane …

Computational methods for high-throughput genomics and transcriptomics

R Bohnert - 2011 - tobias-lib.ub.uni-tuebingen.de
The completion of genome sequences for many species, including humans and a number of
model organisms, was considered a major milestone at the turn of the millennium. It has …

[PDF][PDF] Computational Methods for High-Throughput Genomics and Transcriptomics

R Bohnert - Citeseer
The completion of genome sequences for many species, including humans and a number of
model organisms, was considered a major milestone at the turn of the millennium. It has …

[PDF][PDF] Reproductive Genetics and Epigenetics of F1 hybrid triploids of Arabidopsis thaliana L.

D Duszynska - 2011 - aran.library.nuigalway.ie
Heterosis (hybrid vigour) refers to the ability of F1 hybrid offspring to exhibit more vigorous
phenotypes, such as biomass, stature, growth rate or fertility, that lie outside the phenotypic …

Live-cell imaging reveals subcellular localization of plant membrane compartments during oomycete infections and quantitative high-throughput imaging identifies …

YJ Lu - 2011 - kups.ub.uni-koeln.de
To successfully infect plants, filamentous pathogens such as the oomycete
Hyaloperonospora arabidopsidis (Hpa) are able to penetrate host tissues and form …