Crop genomics: advances and applications

PL Morrell, ES Buckler, J Ross-Ibarra - Nature Reviews Genetics, 2012 - nature.com
The completion of reference genome sequences for many important crops and the ability to
perform high-throughput resequencing are providing opportunities for improving our …

[HTML][HTML] Progress in Myrtaceae genetics and genomics: Eucalyptus as the pivotal genus

D Grattapaglia, RE Vaillancourt, M Shepherd… - Tree Genetics & …, 2012 - Springer
The status of genomics and genetics research in the Myrtaceae, a large family of
dicotyledonous woody plants, is reviewed with Eucalyptus as the focal genus. The family …

[HTML][HTML] The draft genome of a diploid cotton Gossypium raimondii

K Wang, Z Wang, F Li, W Ye, J Wang, G Song, Z Yue… - Nature …, 2012 - nature.com
We have sequenced and assembled a draft genome of G. raimondii, whose progenitor is the
putative contributor of the D subgenome to the economically important fiber-producing …

Phytozome: a comparative platform for green plant genomics

DM Goodstein, S Shu, R Howson… - Nucleic acids …, 2012 - academic.oup.com
The number of sequenced plant genomes and associated genomic resources is growing
rapidly with the advent of both an increased focus on plant genomics from funding agencies …

Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics

SCK Straub, M Parks, K Weitemier… - American journal of …, 2012 - Wiley Online Library
• Premise of the study: Just as Sanger sequencing did more than 20 years ago, next‐
generation sequencing (NGS) is poised to revolutionize plant systematics. By combining …

[HTML][HTML] A genome triplication associated with early diversification of the core eudicots

Y Jiao, J Leebens-Mack, S Ayyampalayam, JE Bowers… - Genome biology, 2012 - Springer
Background Although it is agreed that a major polyploidy event, gamma, occurred within the
eudicots, the phylogenetic placement of the event remains unclear. Results To determine …

Diversity, classification and function of the plant protein kinase superfamily

MD Lehti-Shiu, SH Shiu - Philosophical Transactions of …, 2012 - royalsocietypublishing.org
Eukaryotic protein kinases belong to a large superfamily with hundreds to thousands of
copies and are components of essentially all cellular functions. The goals of this study are to …

Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution

J Wang, JK Na, Q Yu, AR Gschwend… - Proceedings of the …, 2012 - National Acad Sciences
Sex determination in papaya is controlled by a recently evolved XY chromosome pair, with
two slightly different Y chromosomes controlling the development of males (Y) and …

Application of genomic tools in plant breeding

AM Perez-de-Castro, S Vilanova, J Cañizares… - Current …, 2012 - ingentaconnect.com
Plant breeding has been very successful in developing improved varieties using
conventional tools and methodologies. Nowadays, the availability of genomic tools and …

Dissecting plant genomes with the PLAZA comparative genomics platform

M Van Bel, S Proost, E Wischnitzki, S Movahedi… - Plant …, 2012 - academic.oup.com
With the arrival of low-cost, next-generation sequencing, a multitude of new plant genomes
are being publicly released, providing unseen opportunities and challenges for comparative …